BtaINT0048709 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77242504-77243149:+
Coord C1 exon
chr15:77242504-77242644
Coord A exon
chr15:77242645-77243070
Coord C2 exon
chr15:77243071-77243149
Length
426 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTCCCTTGGCCCTCCTCCAGCTG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GGCTACACTGACGAGCCTGTGTCCAAGATCCTGTCCCACGTGGAGGAGGGCAACGTGGTACAGCTGGACCGCTGGGACCTCCATGCGGAGCCCAACCCCGAGGCGGGGCCCGAGGAGCGAGATGAGGGGGCCACCGACCAG
Seq A exon
GTGGGTCCACTGTGGGGGAGAGCCGGGGGTGTGTGGGATCTGGGGCAAGTCTTTGTGTCACCAGACTTCGGCCTCTCCTTGGGAAGAGGGAATGGTAGTCCTCAGCTCACAGGAGAGTTGTCTGCAGCCTCTCAGCACATCTTACTAAGCACCTGCTACAGCCAGGCACCACTGGTTCTCAGCAGCACACAGAGCCAGGGCCTGGCGCGTGTGAGGCCCGTCAGGGAGGAGTCGTGTGTTGGGGGGCGGGCGAGGCCTGGGAAGAGAAGCCAGCTGGGCATAGGCCACTTTGGTGTGCAGGCGCTTGACGGGGCTCCCCGGGAGCTGAGAAGGCTGGGCCAAGGCCCCTTTTCTGCAGAGGTGGCTGTGGGGAGGCGCAGGGTGCATGCGGGAGCCCCTCATTCCTGTCCCTTGGCCCTCCTCCAG
Seq C2 exon
CTGCCTCTGGATGTCTTCAACAACTACTTCAGCCTGGGCTTTGACGCCCACGTCACCCTGGAGTTCCACGAGTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=51.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(31.4=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACTGACGAGCCTGTGTC
R:
CTCGAGACTCGTGGAACTCCA
Band lengths:
218-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development