GgaINT0054693 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25818926-25819512:-
Coord C1 exon
chr5:25819372-25819512
Coord A exon
chr5:25819005-25819371
Coord C2 exon
chr5:25818926-25819004
Length
367 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
GTTCCTCCCTTCCATTTCAGCTT
3' ss Score
10.77
Exon sequences
Seq C1 exon
GGTTACACAGATGAGCCTCTGTCCAAGATCTTGTCACATGTGGAAGATGGGAACATTGTGCAGCTTGATCGCTGGAACCTCCGTGTGGAAGCAAACCCTGAAGCAAACCCTGAGGAAAAGGATGAGGCAGCTGCTGACAAG
Seq A exon
GTGGGACATCTCCTCTCTGCCTTAGTTCCCTGTTCCACTGGAGTGTCTGCTACACTTATGCAGGGCAGCAGGTGGGGTGGGTACCACACTATCTTAAGCCCCTGTGACTCCTGTGCCTGGACACTGCCTGTCCTGCCTTGAGGCCTGAGCCAATGCCACAAGGCCACTGAGATCAGAGCAAAAGAAAAGAGCTGGCCCACCACCTCAGGCTGGTCACCTCTGTGGTGTTCTGGAGGGATAGCTAGTTCCCACTCACCCTCGGGAGCGCAGTGCACGACTGCCTTGTCTTTGCCATGGCCACGCACTGGCCACACACACATTCTGCCAGCATGAAGGTTTGCAACCTTGTTCCTCCCTTCCATTTCAG
Seq C2 exon
CTTCCCTTGGATGTCTTTAATAACTACTTTAGCCTTGGTTTTGATGCACGGGTGACGCTGGAATTTCATGAATCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PD(19.2=51.1)
A:
NA
C2:
PF0060914=DAGK_acc=PU(13.9=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGATGAGCCTCTGTCCA
R:
CGGGATTCATGAAATTCCAGCG
Band lengths:
214-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]