GgaINT0109722 @ galGal4
Intron Retention
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64192284-64198640:+
Coord C1 exon
chr1:64192284-64192415
Coord A exon
chr1:64192416-64198525
Coord C2 exon
chr1:64198526-64198640
Length
6110 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCTGTTTGTGTCCATTGCAGGCA
3' ss Score
11.18
Exon sequences
Seq C1 exon
AATCAACTTTCCTCTACGGATAAAGGCTCTTCCAAGGGAAACAATGCTGACAATAAAACTACTTGGACTAAACAGTGCTTCTAAAACTACAGAGATGCTTGCCTGGACATGTTGCCCATTGTATCAAAAAGA
Seq A exon
GTAAGTTCACTTTCATATCATAGTTCGTGAAAAGACCATTCCTGAATAGCGTTACGCTCAGCTTGGGAAGAATACAAAAAGGAAGAAACACTAATTTCAGAACCTGGCTGTCACTTACAGTGAACTGCTCTTGATGTGGCTGTAAGAGCTCCTCCCATAAGCTTTTCTTTCTTGTTTTTGAACCTGGCTTGTGTAACTGTTTAATACAGTAAAATTCCTTTGGCCTACTGAAAAGCCTTACTGAAATCTATTTTGTAGCTTTTCAAAATCTTTCCAGCAGAACTTCTTCTTCACAATTGTGTGGGGTTTTTTTTTTTCAGTTTGTTTTCCCATCTCGCTCCCATTCATTCTGCTCAGAGTCAGACAGGTAGGAATGACAACAATGATCCCTTTTTCATCGACAGACAATCTAAGAAGCTTTCTTTTCTTTTTTAACCTCTTCATTCTACACATAACACACTGTAATTTAAAGATGCTTGTAGGCTTGAGTGTCTCTGTAGTGATGTATAAACAGTCATCTAAGATAAATTTTCTGCCTTACCATAAATATATTTTAGTGGCACTGACAAATCCAAGTTTAGATCAATCCATTATGATGATACTTAATTTTTATTTAGATTCGTTGAGACATCTAAGTTTAGATCTATTACAATGATAAGTTTTTATTTGGACTCCTTAGCCCTGCACGCCATAAAGTAAGATACACAACAGCTGACTAACTAAATGCATAGCTGCCTAAGTTGAGCAATAGATGAATATGTACAAGCTTCTAAATAGGCATCCATCTCTAAGCTATGGCTCTTTCCTCATCTTGAGATATCTTTATCTACTTCCACATATTATGGCGGTTGCCATTAAAAACAAAAACAAACAAAAAATGCAACTGATTGCATTTAGGCAGTTACTATGTTACAAAAGACCTTGAGTTCTACTGAACTTCTAGGCCAAGAGGCTTAAAACAGTAGACAGTAAGTTGGACTTGGCTAGAGGTTTTTTTCATATTTTCAGGAAAAAATTCAAGATTGCTGTATTAAAGGAAGGATATCATTCTTCTATGACTGAATGATTAAAGTTAGTTTGAAGGAAGGCTTTTTATGTGATTTTTTCTATGAATCAATTTTCTCCTCCAAGGATTGCTTAGGCATTTTATTCAGTCTTTTTTCTTGATCTTTCATTAGCCTACTTGGAAGAAAAGCGCATCACTCACTACCATTGTGTGTGCCTTTTTAAACAAAATATGCATTGAACTTATTTTGCATATCTCTACTATTCTGATGCTTAGAGTGAAAAGGTAGAGGGCACTGTCTTAGCTGAAAAACTGCCTGAAGATAAAGTGCTAACATGCCCTCAGCCCCAGCAAGCTAACGTGTGCTTAGTACACACAGAAACAGAACATTAAGCATGGTAACTTAACTGGGATTACTATTTTTTTTTTTACCACTTTTCAGCATTTAAGTTCCAAATTAATGATATTTGAAAGTCCCCATCTCCCTGTATTATGTGTTTTGTAATGCATACCTTCAGAGCAAGCATACTGATTTTCATCAGATTGATTTCCAAGTCACCTAGGCAATTTCAAAACTCACTGGCAAATGGCTCCATTGTTTCAAAGTACAGACAATCAGGACAATGAAGGGGATACAGGGTTACTTTCTTTTAATCTGCTGTATAATTGTACAGATCATTGCTGAAATGACCCTTCAAAGCAGAAGTAAAAGTTGAGTTGTTGGGTTGGAATAATTTAGGAATAGCTTGTTCAATAAGCTAGCTGTGTCACTTATAATTATAGCAATTATTAACATAAAGAAGCCTAAGTAATTTTTCCTTTTAGCCGACCACAACTCCATTCACCATTACTTGAATTGATAGACTGATTTAAAAATAAAGAGAGTACTGAAACTCCTGAAATGTGAAACTTGAAATTCAACCTGCTTTTCCTTTTTCTTGGAATAGATGAATATTTTTTTGTAAACTAGCTCTCAAGGTTAATGACTTAGAGAGCAGCAAGATTAAAATTATCAGATGATTCTTAATAATTAATGCTATTAATTAACTAGACTTTGTTCCCCTCATGCTTGAAATGCAGGTAGATTTTGATTCATTTCAGCAAAATATTCTGAACGTGAAAGTATATACCAAGAAAATGTTTGCACCTGTAGTGCCATTCTAATGTGTCAAGAGTAGCTTGTATTATTGCAAAGATTATGGTATTAGGACCCCTAAATGAACAAATTCTGTAAATGCATATAAAAAGATTAAATGAATCTAACCAGGAAATCTCTAACAAAACATTTCTGACTTGGAAAATACCACTTCCTCAAACAAACACTTTTCTTAGAGTTGAAAATATCTTAACAGATACTCAGGTCTAGGATTTGTAAGGGAAAGGACAGGAATAAGCTCTTTGAAGAAGCTGGTAGCTGAGATATTTGCCTGGGTCATCAAACATCCTTCTTCACATCCTTGTCCCAGTTTGTCACAGAGACATTCTTCTCAGGACCAGAAAAGGTAGGAACAGAGAGTGGTTCTTTTCTATTCAAGTGCTTTTTAAGTGTTTGTTTTTGACAAACACTGGGGATGGAAAATAAATTTCAATTATTTTAAAAATACAGTTCCTGATTTTTGTCTCATTACAATCTATTCTGGTTAAAAACAAAGGAATTCTGTTCAAGTTGTCTGTAGATTATGTTAAAAAGAGAAGGAGAAAAGAATTGTGATCACTTTGGGATGATTCCCCAACATTTAACCTGAACAAGTTCCTTTTATCTTTTTGTAGAAGCACAGAGAGCTTCTCATGCTTTTGGGCAGGACCACGTTGAAGTACCTTTACAGATCAGGGAGTTATAGCTGTTCTCAGGGATTTTAGCACTCCAGTTCTTTAAAGAAAACACTAAGTATGAGAATAATATTTTTAAAAGGCACAATACAAACATAAAGTTGGGGATAATTAAATTGTTTTCACGCTATATTTGGTCCTCTTTCTTCTTTGCATATCCTGTCTAAACAGTAACTCCAGTGTAATTTTACAGTTATTTATGAATGAGCTCAGTAATAATGATGATGCCTGCCACCTTGTTCAGCTAGGTGATCTTCCGCATCCATATTTCTAATCTTTCACAGGTAGTTGGCTTTAGCGTCTGTAACTCAGTGTCAGTAAGGTCCTTGATGATTTATCTTTATCAAGTAATCTCAGACTAAAGAGGAAGCTGAGAAAATGTTTCCAAACCAGAGTGCCAGATTTCCATTCCTTCATGTCATAAAAATGCATTTGTCTCTGAATAATTTAGTGATCCAGAGCTAATTAACAAATCAGGAATCCATTATCTGGGGAAATAAGAGAGTTTTAGTGTCTCCCATGGTGCCCATTGCCCTGAGCTCACTGATTCTAACAGCACTATTTGTTTTGTATCAGATAGAACAAGCAACAGATTTTTTCTCTTCCTGGGTGTGGTGAATGAGGTCTTCCACCCATGTGAGTTCAGGACACCAGGTTGAATTTGTAAGGTAGAGTAACTTGTGCTGTCCTTACATCTTAGTGTTCTCTTCTACTGAAATAAGATCGAAGGCTTATTTTCGCTCCTGTCATAGATAAAAACTGGGAATTTTTATAATTCCAGGGCTTTTCTTCTGCCTTGGTTTTGTTTGAGCACATAAATAAACAGCAGCAGACACAGGGAAACTTTTGTTTATTGACCTTCTGATGTACTTTATGCTGAAGAGAACTTTTTTTTTTGTTTTTTTTTTTTTGCATGAAAGCCATCATCTATGACTTGAACTGTCTTTGACTTTACACTGTCTTCACTTTATAGATGAGAAAACTATATTGGGAGTCACCTGTTTGAGCTTACCAACAGTCAAAGGTAGCAAAGATAAAAATCTGTTCAGTAAAGGTTCTGAGGATCCGGAGCAATCTCCTTCCTGCATCTTTTTCTCCTTCTATAAATAATAATACTGTTTGTAACTGTTTCATTCACCAACAAAGTTCTTAATTATTGTTTGATTTCTATGTCCGAAAGTGGAGTATTATCTGTGAAGTACGTGGAGATTCCTGAAGATTACTGTCTCTCAAAATATACCATATTTCAGTTGTTGATGCCTATTCACGTGTTTTTAAAATACTGCCTGTTTTTAACAACTAGCCTTAGTCTAAAGTATGTTTTACTGTGTAATTTTCTCACTTACATATAGAAAATTAGCATGCTTTGTATACCAGCTATAAATATCTGTCAGTTCTTAGACCAGTTCATTTTTTTCTTAGGAGATATTAAGCTACATAGTATGGAGGTGAGGTCCTTGGTTTTACTCATAGTCCTCTCATCTGCTTTAATGTATAAACAGTCTTAGACAAGCAGTGCTTTCTTTGGTTCTTCTCCTGCTGAGGAATGGAGAAGTCTATCTGCAGATTCTTCTTTACCTTCCAGGACAGTTTTTAGCCACACACACTCACTGGGTGCAAATGAGCAGAAATAATGAGCTCAGGAAATGTCTCAGTTAAGCACACAGAGATTGTCTTTGATTGTATTTACCTACACAGATTTCAAAGTTTCCCAAGAAAAGAATACACTGTATGGATTCGTCTTTAAAATCTTTCATAGTTTCAGAGAACAAGTTAAGTGATTACCAGAAAAGAGAACTTAAAAGGATAATTTGGTTTTCATGTTCATTCATTTCTCATCTACTCTCTCTAACTAGTGTCAGTTAGTTCAAATTATGTTGTAAACACCTGTCCACAAGGGAATGGGCAAAGGGTTATTCATTTAATATAGGTCATCTAAGCAAGCATCACAGGAAAACAGCTTTGAACCTCCTTTGATCACTTCCACATTTACCTCAGTGAAAGACTTCACAGCACACACTGTTTTTCCCTAAGTGCTATCTTGTTCACATCGGAGTTCCTTTTTCTGCCTCCCTTCCTCCACACATTAAAACTACAGCTGCAAAAGAAACTTTAGAAAATGGTTTTGTCTTTAATCCTCCTGAGTGGTGTTCTCACAATAAATCAAAATGTTTGCACTTATAGCATCAGTAGGTTCAGAAGTGGAAAAACAAAAATTAGTCCTAAATTAGGTTTGCACAGAGTGCTGTCTTAAATAAATAACTTTGCAGGAGTTTTCTGTTCCTTCTTTAGATGTCTTTGCAGAAATTTATTTCAGTCCTCAGTTTAGAAAAGTACTTTTTCCCAGCAATGCTGCAAACTCATTCTGGGACCAGAAAATCCATCTGGGCTCTCGTATAGCTCTTGTACTCTCATATCTGGTAAAAGCTGTTTACTCAAAACTCATCTACCTGTCTGGGTGTTTCTGTTAGAGTTGACAAGAAGATGATCTAGTTCATTCTTCTTTGGTTTTATTGGCAGAGCTGTCCATGGAATAGCAGTAATAAAAAATATCAGTAAAAGAATAAATGTTAAATATAATCATATTTAGGAACGTATTGTAACTGTTAAGATGTAGACAAATAAGAGGGTATGTCCAATGTACTACATCTTTATTCAGGTGCTGCATTCTTTATTTGAGTGGATCAGTTGTGATTAGAATTTACACCTGAACTTTCTCATTTTGTTCAAGTTTTCTAGAATGAAAATCATTCTGGTTTTCTTGTCTACAGACTACATATATGCCTCTTTCTGGTAAAGCTTTATTGTGCATGTAGGGCTCAAATAGGTATTTCAAACCATAATATTTTATCTGTCCAAAAAACAAATACAGTAGATATAGTACAAATGATCTCACTCAAATCCTTACAGCTTTCTGGAGACTGACATCATACCCCCTTTTCTCTGCCATCTAAGCATCAGCAGGGTGGTGATTGCATTAGGTTGTCACAGGTTTCTTCTTTCTGTAGAATAAGTGTACACAGCTCTCCACTTTTTCCACCTCATTTGCAGCATAATCCCCCCAAATAAACAGATACCATTATGGCACTGAGGCCATCCATGCACAACCACTACCTTGGCTACATCTGTACTAGCCACATAATGATGAAAGGTTTGTTCTCCTTTCATTTGTCCTTTAAGGTATCCAGTTATATGTTTTTTGATGTAATTTCAGTAAATTCAATTCACCTCATGTCCAGTAATGAGGCAGTATTTCTGTTTGTGTCCATTGCAG
Seq C2 exon
GCAGCTCATTCATGGAACTGTGCTGCTTAGCATGAAATTGTACAGCATGCTTCCAGCAGCAATGATTACCCCAGCCATGTGTAGTACTGATGCACCGACATCAGTAACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117:ENSGALT00000021411:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(39.3=100)
A:
NA
C2:
PF0079219=PI3K_C2=PD(22.3=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]