RnoINT0111298 @ rn6
Intron Retention
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173849622-173855921:+
Coord C1 exon
chr4:173849622-173849753
Coord A exon
chr4:173849754-173855806
Coord C2 exon
chr4:173855807-173855921
Length
6053 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GTACATGTTGTCTTTTGCAGAAA
3' ss Score
10.39
Exon sequences
Seq C1 exon
AATCAATTTTCCTCTTGAGATAAAGTCACTTCCAAGAGAATCCATGCTCGTTATAAAGCTGTTTGGGATTGACAGTGCCACCCACAGCGCAAATCTGCTGGCCTGGACCTGCCTTCCACTATTTCCAAAAGA
Seq A exon
GTAAGTACATCACCTGTGATTGATGGAGCTCCTGTTCCAATCCAACCTTCTGGGAACCGAATGTTTATCAGGTTATAGCATAATGAGAAAATCAAGAGGACATTTTACGCTAAAATGAGGGAGAGCAATAGAAATCATGAGTATTGAAATCAGAACAGAAGAGTCAGAAATGGAAGACTGGCTTTAGAATCAGACTACATGCTCTGCTCAATAACTAGGTCATTTACAATGGAGAGATGCTAGAGATGCTGCTTGGGCTGTCAAAATGGTTGGCAAGACCAGCCTCAATGACTTTTTCTTCATTAAACAGCCAACTTCTCTGAAATTACTATTTCAAAACGAATATATTGTCGTTTAGAAAAGAAGTCATAAAATTCTGACTAAAGTAAAATCATAAAACATGTCAATTTTGCTAGTATTATTGCTAAAAACAAAACAAAACAAACAAAAAAAAACACTCGGCAACTCCTAAAGGTGCACATAGCTGTGAGTGCAGAAATCTCTCCAACCCAGAAGACTTTGAAAGAAATCAACTGTTTATTTAACCTGCACTTTTTGAGAATCATTCATGCTTAGAACTTATTGCCTGTGCTTTGAAGGGAAAATATTTCCAGAACCATCAATGTATTTAAAAAAAAACATGGAAAGTCCTGCTTTAGGATCAGATGATAAAATCTGAGAGCTTCAAAAGACAGAACTTGTGTTATTATGCTAATATTATTATAAGACATGTTTCTACACATGTTGCCTCAGAAAAACATAGTGTTCTGGAAGTATTTAAGATAATACTTTTCAGTTTTCGTTTCCAACAACCAGACATTATAGAGAAGTTTTATCAAACAAGCCAGATCAAATTTTAAAAATTCATTGGCTTATTTCTGATCTGGACCATGTGTGTTCATCTGCTTGCGTGCTTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTGTATTATGTGCCTATGTGTGTATGTGTATATATGTGCATCTTTCTTTGTTTACACATACATTTATGTGTCCTGTATATTTATGTTCATCTTTGTCCTATGTCCTGCATATCTGTTTCTATGTATGTACGTGTCTGTTGCTTGATTTGAATTAATGCATCTCCATGTATATGTTGAGCACAGGGGGATGTATTCATCTCTGTAAAGTCTACCATCTTCCACAAAATATAAATAGGCAATCAATCGATGTTTTTAACAAAATGGAAAAAATCAATCTTTGTAGACGTATTTTAAAAGCCTACAGAAACACAGGTTAGATCTAGTAGGGATGTGTGCTGCTGTTAGCAGACATTTCAAACATTTGACTTGAGTGTTACGGGCATTCATGACTTTCTCCCTAAGAGCAGTCACATGGCTCTCATTCCAGTTGCAACTGCAGTATTTTAGATCTAACATTCTTGTAAAGTCATATTTTCTGCTATTAACCGGAAAGAGCACTCCATGCATTTGGTCCTCTTCACCAGCCTGCTATAGATAGGGATGTCAGTGTAAATGCTGGGTCCGTGCCAGCATGCATCACTTACATGCATGGGGTGGTCTTCCAGTGTGGAAGTCTGTGGGAGGCCATTATCTGGAGTGGATCCACAGTGACGATTTTTCAAGGAAATGTACGTAAAGCAATAATTAGGCACCAGAAAGCACAATAGACTTCTATGGTTGTTTCAACAAACATTTGGAAATATATTCCCAACAGACTGTTTTGCATCAAAACCAGAAAATTCTCCATCTCTCCTGGGATGAACAGTCAAAAGAAATCAAGATTGCTCTAAGATATCAAAAATCCATCAGGTTCAGCTATTGAGACACAGCTACAAATTCTATTTTTCTCCTTACCACAATTCGCAGAGACTCTCACTCTATTTATTTGTCATAGATATTTCCAGAACACTGAAAAGTAGCATCTTGCTTTCATTTCCACTCGCCGGATGACCCTTGCCCATAAACATCCGATATTGAATCTTTTATTATAGTTTGAATTGCCCCTCGCCAGCTGTGAGCCATTGTAATGACCACTTATATAGATGCAGTCTCCAGCATGGACATGACCTCAGAATGGCTTCCTGGAGGCAGTCTGCCTCTCCGGAGCCTCCACAGTGGGCTTTTGAAAGAGCAATGGTAATTAAGCTCAGATATACCTAAGAGGGATGCATTAGAGGATATCCACACACAAAAATAAGCATTGACATTTGCAAGCCTCAAAACCACTCACCTTCAGGTCTATAGAGAAAAATATCTCAAATTCCAAAGGAAAGATTTAGTGAGGCAAATCACATAACCTACTTTGNGAGACAAGATTGTCCTTGTATCTATATTCACAGTGCTTACCCTACTTAAACAAGGAAGGGTTTTCTTCCCACAATCATGTCAGGGAGCTCCTTTCCCAACTTAAGAACACAGATAAATGGTGCACTTGTTACTTAGCATCTTTACTGTGGAAGTCCCTTCATCACAGAGATTCCCTCCATTAACTGAAAGACAGACCCTTCTTTAATGTTACAATATAAACCAAGATCCCTATTACTCCCCAGAGATTCTTATTCAGTTCTTTTCAAAAGGGACAGCATTTTGAAGACTCCTGGGGTGAATTAAAGTCTTGAGAAATAAGAATAATTTGCAGAATTTCAAACATGACCCAAGATAGGTCTTACTCTCCAGCCAATTTGATTTCTTGGGGGGGGAGGGTTGCCCAACTTGTTAATATTGACCATGTCATGACATCTTTGCCTCAGAATCAAGTAGTAAACAGCAGCTGCACTGTTTAAATTCATTGGTTTTCTTATGACCCACAAAAGGCCCTCCATTCCATTGCCTTGCTTGAGAACGGAAGGCTCTGTGGAAAGGTGGTCTGATGTCAGACATCAATCCACTTAAAAGTAGAACAAAAGCCAGAATTCAGGCCTGAGTTCCCACCTTGGTTTCTCTGTTTTCAATTTCCTGCTTTGAGATGCCACATCCTATAACATGAACATACATAAAAATGTTACCACCCTACACAGGCTCTGGCCTCAACATCCCAGCAGCTCTCCATTTTGAAATGCATGAGCCTCACTAAGTCTAACAGGGTGAGGGTCTCAAGGTATTTTATTGTATTGGATCCTGTGGTTCTTCTGGCTTCCAAGTGACATAACCATCTGTATACTCTGACCCTTGATGCTGGGAATTGATGTAAAGATTTTTGATGACTAAACTCAGTAGTCATTATTTTGTTGTTTTAGGAAGTAGCGTGACAGTAGCATTATCCAGTTGATTGGTCTCCCTCGATGAAGCAGACTTGGGGTTGAAATTTTTAATCACTAAACTGAGCACAAGTCAAGCTTAGAAGACCTTAAGGATATGCAGGACAAATATCTTCAAGTGCCATGTACAAAAGTAGAGTTTAATTTCTAAGCACAGATTTTTTTTCAAGGAGTTATGAGTAGTACAATTGTGCTACACGGGAAGAGTTTACAATCTTGTGGTCAGAGCTAGTTAGCCTCTCCACACCACCCTTCTGAAGCCAGCCTTCATGGCCAGAAGAACCCCAGCACTATGAGAACTCTTGAAAAACATTGATATTTTTGTCCAGGAAATCCCAGGAAGCTTAGCTAACAAAGGGTAGATGCTGCAGGCGAGCTCCAGGAATCTTAACACACAGTATGATGCATGTAGACAGACTTTGTAACTTTTGTGTCTCTTTGTTTTGTTTTTTGTTTGCGCATAGGTAACTTACCAATAAGTATTTTCACTGTAGCATCTTATTAAGTTTTATTTTTAATATGGATATTTTGCATGCATGCAAACCTTTGGACCACTTGGGTGTCTGGCCCTCATAGAGCCCAGATGGGGGCACTGAGTTCCCTAGAACTGGAGTTACAGCTGGATGTGAAACACCATGTAAATTCTGGGAATCAAATCCAGGTACCCTGGTCCAGCAACCAGTGCTCTAAACCACTGAGCCATCTCTTCACCCCAATAGTCACTGCTTTTTAATCACTGCTGAGTCTCACCTATGTTGGTCTAAATATATACATTTTGTTGTCTCTGTATCTAAATTTTCTTTATTGTTTAAATTAAAACCGTCCTCTGCTTTATATATAGCAATACAACGTATATATTTAATAGCAGTATAATAGAGTGATTTGGCACACTTTTAAACAGAAGAAAAAAGGAAGATCATTCAGGTTACAGCTGTGCCCTCAGCACTAATTTTTAAATAATATCTCTTTCAAAATGGATTAACATAACACAGCATATTCAGGGACTAGTCAGGTCTGAATCTTATTGCCATGGTGAGTGGAATTCAAGAGAAAGCCCCGTCTCCTGAATCCACCAACACTCTCAGGTCTGTTTTTCATTCCTCTCTGGTACTGATCCTCTTTTGACATTTATTTATGGGAAAGTCTATGAACACCCTGCTTGAAGTACTTGGTACAGTCTCTTATCTGAAAATAAGCTCCCAACAGCAAACAAAACAAACACCTGAAAAACAGAACGGCCTTAAGGTTTGTATGGCACGATCCTCCTTTGTCTATTCGGTAATTCATATTCTCTGTGCCCTCTTTCCTAAGCCCCATGTATCCTTCTTCCACAGCAAGAACTCTGACTTCATTCTAAATCCTGGGAACCAAGCTGGTGTGACTCTAGATACAATCTATCTAAGGGCAGAAAGAACAGACACCATTTGATTCTTTCTTGATAGAAACCGGGTCAAATAAGTCGGATTCTTTTTGTTTGTTTGTTTCAAATGTGGCCAAGACACAATGTTCCAGAAAAAAAATCATAAACCTAACACATTCCAAGAGGCAGGTGTAGAAATGTCATCTTAGGAGTTCTACCCTGCAATTAATCAGGGTGGAACTTATAGCCAAGCACTGGCTGTGTGAAAGCTCTTTTGGATAAAAATGCCTAGTCACTCACACTCTGCTTTCTCACACTCTGACTCTCCTCCCAAGGTGAAAGGGCACCTGGGGTTAGAAAGGAAAGGAAAAATTAAGAAGACCCCTCGGCCTGCTAACTCTGATCTCCAAACCTCAGCCCCCATTAAAGCTGATAGTCTTTTTGTTTTATCAGAAACTGGCAGCTAGTGGAGCTCATTAGGATCTGCCAGTTTAGCCAGGGGTGCTGGTTAAGCCTGTGTGAGCTGGGTTATCTCTGCCACTATGTAACCACCTGAAGTTCTCTGCCAGCTCCTGGTAGGCCCTGAATTGGACAGCATTGAAAAGATGGTTTACCTTAATCTTGCATTTACTTTTGCTATCCTATGGGTCTACACTTCCAGTTTGGTATACTGAAACCAAACATCATTCTAGTTGCCATTGGAATATGTTGCCAAAATTCTGGCTTGTACACAGGTATCATTTAATTATTTTTCTTTTGCACAGAGATCTGTCCATTTAGGTGCTATTGCAGCCATTGGAAACGTACATGATTTCTTTCTCGGTTAAAGTTATTTCCTCCATGCTCTCTCATTTACTATGCTAATTTACAACTGATTTGAAAGGATTCTGAACACGAATAATCTTTCTATTTATGTGTAAAGGAACATTTCTCTTGTGAAGTCCTACAACCATTTTGATTCTGCAGCCCATATGCTGTGCCGATTTAAATCTCGTCTTCCTATAAATTTAGACTCTTTAAATGCCCAAGAAATTTAGTTACTGCATGGAGAGGAAGAAAAACAAAATCTCCAAAGAATGACCATTCTTCCTGAGTTCCAACACCCATAAATCCAGAGTGCAAATCTGAGATGGTAGCCAGTCATCACCACCAAAAGCTATCACCAACACATGCTACTGTCAAAAAGTACTGTAATATTAACCACCTATGAAAATAAATGTGATAACTATGAAAACATGTTACTTGTGGCATGTTAGCAGGGAGCTGTCAATCAGCGTCTGGACTTGTGGAGTATATTATTTCTCTTCTAGCTACTGAATGAAGTCATAGAAACAGCTGCCACTTTCCATCCCAAAATAAGCATGAGCAGACACTCACAGCTCTCCTTGAAGTGATTCCTGTCAGTATGTACATGTTGTCTTTTGCAG
Seq C2 exon
AAAGTCTCCGCTGGGGTCTAGGCTTCTCAGCATGACACTACAGAGTGAGCCTCCTATAGAAATGATGGCTCCAGGAGTATGGGATGGGAGCCAGCCTACCCCACTGACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228:ENSRNOT00000041499:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(33.8=100)
A:
NA
C2:
PF0079219=PI3K_C2=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]