GgaINT0111245 @ galGal4
Intron Retention
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74365314-74365599:-
Coord C1 exon
chr1:74365497-74365599
Coord A exon
chr1:74365389-74365496
Coord C2 exon
chr1:74365314-74365388
Length
108 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATGTTTCATTCTCACTCCAGCTG
3' ss Score
8.4
Exon sequences
Seq C1 exon
CACATGGAAACATGGATTCCTTCCAATGAGCCTTGCAAGATCTGTACTTGTCTTGACAACAGAAAAGTAAACTGCACTGTTCGACCTTGCACTACTATCAAAA
Seq A exon
GTAAGTTAGTTTAGCTCTGAGTACGACTGGTCTCAAACAGATTTTTATTAACCTAGTGTTTTAGTTCTTATCTAAACTTAATTTATGGATGTTTCATTCTCACTCCAG
Seq C2 exon
CTGTGCAATGTGGCCCCTGTGAAGTTCCTCGTCTGCGCAGGGACCCTAACCAGTGCTGCCCTGTGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272:ENSGALT00000037259:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(45.9=100)
A:
NA
C2:
PF0009313=VWC=FE(33.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTCCAATGAGCCTTGCA
R:
CACACTCATACACAGGGCAGC
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]