RnoINT0164170 @ rn6
Intron Retention
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158195985-158196607:+
Coord C1 exon
chr4:158195985-158196087
Coord A exon
chr4:158196088-158196532
Coord C2 exon
chr4:158196533-158196607
Length
445 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGCCTCTTCTTCTCCTCCAGCTC
3' ss Score
10.68
Exon sequences
Seq C1 exon
TTCCTAGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGGAAGATTAACTGCACTGCACAGCCATGTCCCACAGCCCGGG
Seq A exon
GTAAGTGAGTCTTCCCTGCCTGGGGTCCCTGATGGAAGGAGGACTCTGTGGGTCTCCAGCCACCCAGTCATGTATAATGGACCAATCCAAATAAAGAGAACACCCACAGAGGTGTTCTTCTTCATGAGCCTAAATTTCTGCTTGCTGCAATCATGAGTCCATTTTTGGTACCTGGAGTAGGAACTCTCAGCTGTGTCCTTGTCCTTCCATCCAATGCTTGCGTCAGACTCAGCGTCTTCTGAAAGCTAAGCATGAGGATAGAGCAAGACCCATTGCGAAGATCTGCTCCATCCAGCATTTTATCCCGTCCCGTGGTCCAGATCCTGTGAGAGTCCCAGTCAGGGTCTATGCTGCCTTTCAGGGAATGAGAACTTGGAATACCTTCTCTGGTCTAGACCGTACTTGATTTTTTTCCCTGAGTTTCCTGCCTCTTCTTCTCCTCCAG
Seq C2 exon
CTCCCACCTGTGGCCCTTGTGAAGTGGCTCGTCTCAAGCAGAGTGCAGACCTGTGCTGCCCAGAGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689:ENSRNOT00000026643:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(47.9=100)
A:
NA
C2:
PF0009313=VWC=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]