MmuINT0174511 @ mm10
Intron Retention
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125662965-125663578:+
Coord C1 exon
chr6:125662965-125663067
Coord A exon
chr6:125663068-125663503
Coord C2 exon
chr6:125663504-125663578
Length
436 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGGCTATTCTTCTCTTCTAGCTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
TTCCTGGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGAAAGATTAACTGCACTGCCCAGCCGTGTCCCACAGCCCGAG
Seq A exon
GTGAGTCTTCTCTGCCTGGTGTCCCTGGTGGAAGAAGGACTCTGTGGGTCTTCAGCCACCAGTCATACACATAACAGACCAATCCAAATAAAGGCCCCATGGAGGTGTTTTTCTTCTTGAGACCACATTTCTGCTTGCTGCAATCAAGAGTCTCTTTTTGGTACCTGGTGTAGGAACTTTCAGATGTACCTCTGTCCTTCCACCCCAATGCTTGCGTCAGACTCAGAGTCTTCTGAAAGCTAAGCTGAGATGTAGAAAGACCCAATGTGAAGATTTGCTTTAGCCAGCATTTGATCCCGGTCCCATAGTCCAGATGCTATGAAAGTCCTAGTTAGGGTCCATGCTGGCTATCAGTGAGTGAGAACTTTGAGAACCTTCTCTAGTCTAGACCATACTTGATTTTTTTCTGAGTTTCATGGCTATTCTTCTCTTCTAG
Seq C2 exon
CTCCCACGTGTGGCCCATGTGAAGTGGCTCGCCTCAAGCAGAGCACAAACCTGTGCTGCCCAGAGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930:ENSMUST00000112254:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(47.9=100)
A:
NA
C2:
PF0009313=VWC=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types