GgaINT0111608 @ galGal4
Intron Retention
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176273977-176281155:+
Coord C1 exon
chr1:176273977-176274068
Coord A exon
chr1:176274069-176281057
Coord C2 exon
chr1:176281058-176281155
Length
6989 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTCTTCCTTTGCTTTTTCAGATG
3' ss Score
12.46
Exon sequences
Seq C1 exon
CGTGAACGAACGTGATCATTTGTTAAAAAGGCTTGGCAGGAAAACTCCTCCGAGCCTTTTCCGTGCTCATTCTGTCCAGCAAAGTGTATCAC
Seq A exon
GTAAGTAACAGTTCATGTATGCATGCGTGTTGCACAGCAGTCAGTCCCAGATGAGTGAAGCGAAAGGTGATTACTTTTTAATTAAATTGTAGGTAGAGATAATCTAGTGCAGAAGCTGAGCTGCCAACCAGGAGACTTACATTTGGAAGTGGAATTAGTGTATTTGGCCCTAGGCAAGCAGAGCTCAAATGTGGATAATTCCCTAGGATCCAATCAACGGGCCGAGATGACAAAATCCCAACATGCAGATTCTCTAAATGTAAAATCCTGATAGTCTCAAGAATGCTGTGAAATCAAAAACTCTGCAGGATAAAATAAATGTTGTGATAGAGCCTAGCTTAAATAGAAATGGCTTCTTTATTCATAAAGTCTTACTAGTTGTGGTTAGCTGAGAATACAGTGATATTTCAGGATGCCGACTAGGAGTTATGCGTGTGTCTGATGAGGAAAGCCATGGCACGCAGAGCTGCATTGCTCCTCTCCCTCCTCTGTAGGAAGGAGAGGTGACCTCACACCTCAGTGATGCTTTTTGGAATAAATTACATTTCTTGCTGGTGTTGAAGTCATCCATTTATTCATCTTCCTGGAGAAACACATGACAGGCCTCTATCTGCCAGACCTGGGTTTTTTTGCTCATCTTACTAAGGAAACAACCCCCTGCATGCAGCACTGCTGCTCTGAGGACAAGGGGCAGGCATTGGGGATTTGGGTTTTGTATTACTGTTGCAACGAGAAGTTAGAGCATTGACTGCTCAAGCCTCCCAGAAAGCTAACTGGAGTCTAATCTCACTTGTTGAGTGTATTGTTTTCCGTGGCAGAAATGTGGTTCATGTCATGGCGGCAAGGCTGGGATTTGAGAACTCAGATGCCTGAGGTATCCTTGTTTTCCACAGGGAATTTAATCAGAATGGGTGGAACACTGATGAATCTGCTTGTCTTTGTCCTTTACAAAACAGCTGTAAGGATGTCGCTGTCAGTAGGATATAGGGTCTTTAGTTATCAATCTCATTGCTCCTGGCAAAGGAGATCGATGTGCCAAGCAGCCCTGTGGACCACGTGCTCCTTCCAACATCCAATCCTGTGAATCAGAGAGATAGGGATGCTGACTGTAGCTCTGCTGTAAGCACACAAACATGTTTTGTGAGGGAATTCCAAGGAGGATGATTGGCAGAAGGAATAGGTAAAATACATAAATAAATTGCTGTCAAGGAAGTCTGCTGTAGACACCACAGTGCAGAAAAGAGATACACGGTAGTGAATGGTCAGACTTGATACGTGCTTTTAGTTTGGTGTAGCACGTATCAGTATGTTAATTAAACGAATTGCTATTGGGAAAGGAAAATAAGACACTGAAATAAACTCTAAGTTCAATAACTAGCTGAAGTGCTAAATGAGTCAGCGCAGGACAGGTTACAGTCAGCAGTCTGTGTTTCACGTGAACACAAATTTGATTGCTGTTAGGTTTCAAAGACTCTTTCTACAGTGTATCCACAATTCTTTAAAATTTCCACCGTCTCTTGTCAAATGTATTTTCCAATGTTGCATAGCTGCTGTATGTACAAGGCCATGTGAAATTCGGAGAACATATGTGCTGTTTGCACAACCCTGAATTGTATAACTGTTTACTAAATTCTGGAAATCTTCAAAGCAAAGAATTGATGAATAGGGCAGTCGCCTTGACTTGCTGGGCCAATATCTTAAATCACACCGCGTGCACTCTGTTTGAAGTCTTGAACTGTTCGTGTGTTATTGCCAGGCTCCAAGTCCTCAGCCTGTGAAGGCCACTTCTTCCAAAAATCGCTTGTGTGACTTCAGCTCAGAATCTGACACTTGCATATAAAACATTAAAATGATTTGTTTAGTTAGAGCTGACACAGGCTTAAGCAGATCGACTGCTTTGGTCCCAGCGAGGAAGAAAAATGAGGTTAGGCTTCCTAGAACAGTCTGTAAAGATGCAGTACTGGTTTGAGATGAACTTTTGACAAAAAATGTTTCCAACTTTTTGGTGAGGAAGTGATGCCTATATAAATTTGTTTCAATCATATGGAGATAAGTGCTAGAAAAATATTGCAAGGAGTTTCAAGGCTACTTCTGGTGGTCTGCAGTGGTAGGGGGGAGATGACGGAGGGTAAAGCCTGCACAGCCCTGTGGTGAGTGGGAAAGAGGAGCTCGCTCAGTGCCTCTCATAGCTTTCTGTTGGTGAGCCACCCCCTTTCCTAAAGCGTTAGCAAAGCAAGCCAAGTCTCCATCCCAGTTGCTGTCTTTTCTCTGTTAGCTCTGACTTTGTGGAAGTAGCAGCTCCTTTAGACAAGCTCTGTGGATACCAATGACAGTTCTTGAGTCCCCTGTCTTCGTTGCATGACTGGCCTCTGCCACCTGTGTCCCCAGAGCCTCACCAGCCAGACAGGAGTGTGATGCTGTCCCATTTGCTCAGGTGCTTTCATCCTTGACTGTCTCTAAGGAATGTCCAATACAATCTCTCCAGCGCAGATTCACTCTCATAATTCAGAGTACCCTGTCAGTGTTCAGTTGTCATTTGTCTCTGCATGCTCTTACAAACAGAGTGGAATCCTCCTGTTAAGCACTGCTCTGGCAGAATTCCCCTTGAAATGCAGAGTGCCGTGCCTGAATGAGGATTAACGTGCTTGGCCCAGATTTCCTATGTTTGCAAAGAAAATCCCTCCTCCTTCAACAGTATATGGTGATTGCTTAGAGTCAACGTGAACACAGGGCATATGGTTTGCACCTTATTAATCAATAGGAAAAAAGCACCTGTCAGCTGAGGTTTGTTTCACAGCATGGGGGCTGACGAATAATAAATACTAATAATGTGTTCATGCTGAGGACTCTAATCTTACCATTTATTTTCCACCAGCGGACACCTTCTTCCTCTGGCTTTACTCCTGGTGCATTTTGATTTGACAAACAACAGGGTAGCTACTTCAGAAGCTTTTAAAACTCCATTTCCTACTATCTTACATGTGTTGGAAATGTATTATCTCTATTTTTTTTTACAAGACAGCTACGTATTGGTTGGCTGTTGAGTAATGTGACTATATTTTAAAATCATCTTAAGGAAAAGAAGTGGGAATAATTAGTTCAGAATCAATGCTGAGGCATCTGGCTCTGTATTTTACATGCACACACCCGTAAGTTAGTGTCTGGGAAAACAGAGATGGGACCATTTGTCAGGAATTCCTCTTGGGTCCTTTAGAAAACACAGGCATGGTTTATCAGCATGGAAATGAATGATTTCTGTAAGCATCAGTCAGAATGCAGAAGATTTAAAGCAGCTCTTGCTTTCCCAGGATCAGTGGAAGAGGGTTCTCTGAGAAGTCCAAGTGGAATTTGTATTTACAGTTTAATTGGGAGGCGTGAGTTGTAACGTCTGATTAAGTCTCCTTAAAAACCGTGCAGCACTCAGTGTTTGGCCTGAGAGAGAATTTGGCTGGCCAGGCAATACTCCAACATTGACTTTTGCTTTGTCACAGAGATTGTGGTAGACACGGCACTTTTTAAAGGATTTTTTTTCTTTTTTTTTTTTTTTTACAGTTCATTTCCATTTTAGCGGGTTTGAATCTGGGTGTTTTTCTCCCAAGACAAACAATATGATGGCACAAGGCTTCTTACACTTTGGGCTGTGCTGAACTGCACACCGCTGCGTGTATGAAATAGCGAAATGCTCAGGAAGGAAAGATTTCAGGGAGGCTCCCAGCCAGAATCCCTGCTTGTTCAGCAAACCCAGCAGTTCAGGTGTATCAGATGAGCACAAGGAGCCCGAAGCCTCTAAAATAAATCTCTGAAGCATGTAAAACTGTGCACAGTCTTTCAGTGAGCAGATTTTCACACCATCACAGAGTCATGGGGGTCAGAAGGGACCTCTGGAGATCATGTAGCCCAGCACCAGCACCCTGCTCTCTGATCCCCATCTCGGAAGCTATTGCACGTGAGTGAGCTGCTGAGATGGAGCAGAGTGCTGTGCACATTCGGGATGTGTGCAGAGAGGGTTTCTCTAATCTAGCGTTGCGTGGACCATTGCGAGGAACAGAAAATGATTCTGTTAAATTAGAAACCTGATGGGAGACTAGATTCTGATCTACTAATAGAATATCAAAGCTTTAAAAGGAAAAAAGAAAAACACCAGAATTCTTTTAAAATTCATTAGGTTGCCTGATAGTATCGCGTGCCAATGAAACCTTAGATTTGATGAGAACGTCTGTGAATCTCCGCTTAACAAATGAGCCATGCTGACGGAGATTTAGGAGTGCTCCTTCCCTCCGTTAACAGAAGGTCTCTGAGGACAAAGGTTCTTCCTTCTGCAGCGGCCGCGAGTGGCTGTGCCCACAGAGCCCCCGAGAAGCGCGCTCCGTCCTGGGGCTGGAACAATGGGAGCCTTGTTCTGCGGGCAGGCTCCGAGGTGTGGTTTTAAAGCCAGGGTTCGGGGAAAAGTTCAAACTTCCGAAGTGTTCCCTAGTAACTGGCTGGTGGAAACTGTCATTGTTTTTGGATGGGGTCTGAAAGCAGTGGAAATGGAGAGTTGAAACGGAGAACGTGGACGGGACGTGAGCGTTCACAGCATTCTCATTCTGCAAGGCACAGAAGCTCGAGCTTAATCATCATACAAATTAAAAGTATGGTATGAAATGATCTTGCTGTATAGAGATCAACGGTAAAAGCTTTAAATATACTGCCAAATGTCTGGTTTTGACTGAATAGGGGCAAGGTGCAAGTACTGGGATCACAGCCTTTCCCCTGACAAATGCACAAAAAAACCTTGTTGCTGATATTTCAGAGTGGATTAGGAACACGAGGACGTAGGAATGCCACTGGTATTCTTAACCATTGCTCAACTTAATCCTGCAAAAATTTGTAGGCTAAGGTGTTTTCTGCTGGTGTGTGTTAAATGTCTTTATCTGACTGCATTTTGCTTCGGCTTTGCAGAGTGGTTGTTCTGCCTAGCTGTTTTGTAGCACTGGAAATAAGCAGGCAGTGGAAAGATACCTAAGTTTGACAGGCTGCCCGCAGTTGTGCAGTAAGCAGTGTTGTCTGCAGTAGTTACAGCAGTTGAATCTACTCAATCTACTGGTAAGCCAGTACGGCAAAGCCATCTGAATGCACACCAAGTTATGGAGCACAGCTGCCAGGCTGTTAGGGCTTAATCTTGAAGTCTTTGACCAAACTGACTTTCCATTGAGAGTTTTGCCAAAAAAGCTAACAGGAGGCTGTCCTTCAAATGGAAGAATCCCACCAGAGGTATTCGTCTAGGTGTGAATCCACCCTTTTTTAAATGAAGGCCTGTTTTGTAAATATTTCCTTTGCAATTATACAGGATGCACACAGTTTTTCCAAAAGAGTTGCATTTCATGAATATACTTTGTGAACCTTCAGCTAGAGACAGGAAAGCCCAAGCTGTACCTCTGTAGCTGTATGTATATTGGCATGGAATCGCTCAGGGAAAATGAATAGGGATGCCAGGACCAGTCACGTAATGAAATCAAAGTTCCTACGGTGTTACAATCACTCTAAGTGGGAAATGTGATTACTCTTAGTTCTGGATGATGTATTTCTGTTTGAACCTCCTCCATCTGCTAGCAAAAGTTTCCTGCTGTGCTTGTGGTTCAGGTCAGTTAATCTTCTGCTAGTGTGCTCTTCTGCTAAGGTAGGGTACGTTCTGCCTTCTGAACTCAAATCTCCAGCAAAGTCCCTGTGGCTCCAGAGGTGATGTTGACCCCCATTCTGTGAGAGAAGACCCTCCCCAGTAACTAAACAAGACTCTCTTCCCAGCAAGGTCTCCTTCATATCCTGCTCCAGTCTTTTCTCTCTGGGTACATGATCCAGGGGAAATATGGCTTGAGCCTGTTAAGGGAGGACTCCTGAAATACGTCTCTGGGTAGTACTTGGCACATCTGTCCTCCCTTACCTGATGCTGCATCTCTACCTGGGGTGGCTATGAGGCAGGAGTTCATGAGCTCCCACTTCCAGGGCTGTGGTATCATTCCTAGGTTCTCCTAGGCAGAATTCACACCTGCTAACTCTTGCCTACTTTCTTACTACAAAGCCTTATCAGGTTCTGTGTAGCTTGGGACATTTTCTCTGTATTTTGACACGATGCAAATCTTTTCCATTCTGACTACTCATTTTCAGTGAATGTATCCTTTCTCGGTGTCACAGAGAATACTGTGCTTTGCTCTGTTCAGAATCTTCTGTAAACTCATGGCTGATTTTAATACTGTTTTGAGTTTTACTGTCTCGGTCCATTAGTTGTTGTGATGGTTTTACCAGCAGCGTGGTGTTTCGCAGATGATGTCAGAAACATCACTTGCCTTGTCCAGAATGCTTTAAAAGAAATCAGACATGTAGTTCTTCTCATCTGAGTAATTTCTAGGGAGACTGAAGAATTATGTTCACTCACAGGATTAACTTGTGCAAAACAGAGACCTCCAGAATATGCTGAAGTTTCTTTTCTTCAAGATTTGGGTGACTAGACAAGAGTTGCTCAATGCAATTTGCTGGTGACACCTGGGAGCTTGTTAAAAAAGTAAAAGAAATTCCTGAGTGGACTTAGGAAGATGTGACTCAGATCCAGCTGTGGTGTAGACATTTCTGTGTTCCTTCAGGCAGACCACAGATACCAAGCAGACGATAGCGTCAACCAAAAATGCAAATCTCCACCTGCCTGTCCAGTCTTTAAAGAAGCTCTGCTACTGTGGGAGTCAAGCTGGTGTCCAAAATCTATGCAAAGTTTGTTAGCTGGGTCAGCTCAGAGGGAAATGTTGACCATGTACACCAGTGTGGCCTGGGAGGGAGCAGTAAGGCAGAGCTGGCAGGCATCCACGTGGGCACAGCTGTAGATGACAGAAGTGCAGCATAGAAATGAGGATCATTCCTGTCTGTATTGTAACTTCAGCAATGCCTAAAACTGTCGGTAAAAACAGGCTGTGCCTTTGAGCTGAACTCCAGTAATTTTTCTTCTTCCTTTGCTTTTTCAG
Seq C2 exon
ATGGATATGCGTTTTCTCAAGAAGAACACGGTGTTGTCTCCCAGTCACAAGTTGTTCGATCCTACGACACAACCAAAAGGAGAACAGAAATAGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106:ENSGALT00000027641:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]