HsaINT0015366 @ hg19
Intron Retention
Gene
ENSG00000132932 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:13533]
Coordinates
chr13:26586669-26595420:+
Coord C1 exon
chr13:26586669-26586760
Coord A exon
chr13:26586761-26594025
Coord C2 exon
chr13:26594026-26595420
Length
7265 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
CCTGTGTGCTTCACTTTCAGATG
3' ss Score
11.94
Exon sequences
Seq C1 exon
GCTGAACGAGCGCGACCGCCTGATCAAGAGGCTGGGCCGGAAGACGCCCCCGACGCTGTTCCGGGGCAGCTCCCTGCAGCAGGGCGTCCCGC
Seq A exon
GTGAGTACCGCGGGCGGGGGCTGATGGAGGAGTGGGTGTCGGTGCGGGGCGGGGGTTGATGAGGAGTTGGGGGAGCGGGCGCTGATGGGGGGCCGGGTGAGTGCTGACGGGGGGTGGGGGCGGGGCGTGCGTTTGGAAGTGGAACTGCAAAATGTGTATTTGGCCCCAGGAACGTGCAGCTTGAGTGTAGGCAATTCCCTGGGACCACAAAATCCGTAAACTTAAAATCCTGGTGTGGTTATGATCCTTCCGTCAGCCTCCCAAGAGGAGTTTTTTAAGGTTGAAGCAGTATGACTTTTAAACTGTTGCCCCTAAAGATAGCAATATGAACTGTTTTGTGTAGTGTTGCCATATTGATTGAAACAATGACCATCATTGGGGAAAAACATCATGCTTCTCCCAGGAAGGCTGCCCCACGTCTAAGCCTGGCGTCCCCCTGCCACCCCCGCCCCCACCTCCAGATTCCAGAGGAGAGTGGGAGGCTGTGAAACATCCCCTCTCCACTGCCCCCGACTTTGGAGCTCAGGGGGAGCTCATGGGCTTGTTTTTAGCAATCCAGTCATCAGATCCCAGCTGAGGCAGATCCAGGCCACCTTCCCCAGGGCCAAGGCCAACCCAGCCCTGCCTCTCTGTGTCCTGCGGCCTTCCCCAGCCCCCTCTCCACCCCCATCACGTGCACACGCCAGCTTTTCCTCCCATACTTACTCCCTGCCTCCCTTTCCCTTCCGGAGGAGTTTAGAGGGAAACGACTGGTAGAAAGAGATGAGTTGGGCCGGACGCGGTGGCTCACGCCTGTAATCCTAGAACTTTCGGAGGCTGAGGTGAGTGGATCACTTGAGGTCAGGGGTTGGAGACCAGCCTGACCGACATGGTGAAACCTCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGACGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTAGGAAGCGGAGGTTGCAGCGAGCCGAGGTCATGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTTGGTCTCAAAAAAAAAAAAAAAGAAAGAAAGAAAGAGACAGATTTATGAACGTGAAGAATCATTGTTCACACAGTACAGGCAGTGAAGGATCTGTGTTCTGTTGAGCTCTGCCTGTCAACAGGTATTTGCAGACTTTCTCAATGGAGAGAGAAGGAGGGAGACAGAGTATCATTGCTTTTCAGTAATCTACCCCCTGTCCTCACTTTCCCATGTGGAATATCGTATGGGAAGAAGGGGACTGACATGCTTCTGTCCTTTAATGCTCCACTGCCCTGGGAGGTGGGTAATGCCACCCCAAGGACACAAAGCAGAGGCTCAGGTCAGAAAGTGGGTGGCCCAGCATTGCTCAGTGGCATGCCATGAGGTCTGGATTGCAGCCTCAGACTCTGGCCCAAAAGAGAGGTAAGTCAAGAAGTTTGATGGGACAGGAGTGCTAACTGTAGGGCAGCCCTCTGGAGATGGGCTGCCTGGGTTCCTGTCCCTGCTCCCCTGCTTTTTCGTGACCTTGGGCATGTTACTTAATGTCTGCTTCTGCATCTGTAAAGTTGGGTAATATGAGAACTTACTGGATGCCAGAGGTTCAGTGTAGGTCCTGCCACCCACAGCTGCACAGAAAGCCAATCACTGAAACAACAATTATAGCCAAGGAAGAAGGCTTTATCTGGTGCTATAGCCAAGGAGGTGGCAGATTAGTCTTAAATCCATATCCTTGACTGACTAAAATTAGGGGTTTATATAGCAGGGAAGAAATGTTAACAATGTGTAAGAAAACAGGAATCAGTAGGGGTAAGGAAGCAATCAAGATGAATGAGGGGCTTAGCATCTCGTTGTCTGGATGAGATCATTGGGTGAGTTTCAGATCTTTGCTACTTTTCGAGAGGCCTGTGGGTCCCTACCTAAGGAAGGAACTCAGATAAAACAAATACAAATGTCAAGCTTTAAGACCAGAAGGGTCATTTCTATGTTAAAAAAACAAAAAAACAAAAACAAAACTGTCTATGGGACTATTGGGTTGGTTTCAATTAGGAGGATTAAATGAGATCATAAAGATAAAGTGTCTATATAGGCAATATAGGGTCCAATAAATGTTGGGTATTATTATTCTGCCATTAGCTGAATAATTTTGGGAAACTTAATTTCTCTAAATTTTTATTTTCTCCTGTGGAGAAAAAAGAATTTTAATGATATACATCTTACACAGTCCTGTGAGTCTTCATGACAGCATGTGTAAAGCACCTTCTGTATGCCAGACACAGAGAAAACACATACAGGTTCCCAGAACTCTACAGGGTCTGTTCTGTTGAGCCGTGTTGCCTCTCTGATGAATGTTTCAAAATAACCATAGACAGAATATACACGATATATATGTTGTGATCAAAGACCGAATGAGAATTTTTATGGGAGAGTCATAAATGTCTTAAAGACAACTACTAAATGCTTTTCTTAAGTCAATATTTTGAAGGCCAAAAAAAAATCTACTGAATAAATATAAGAAATAAGAAGGCTTCTGAAATCACACCACATTTTTTAAACATTCAGTGACTAGTACCAGAACCTGATGGATAACTTAGGACGTTTCTGTCACTAACAGCCAGAGAAGATCGTCGGGTGGTCAGAGCTGGTCCTGGGGTGCAGGATGGGCATATAGCAGGTCTCAGCCTTTGATGTTCCGCCTGGGTCTGTCCAGGAAACTAGCAGGAAAAACTCTAATCTTGGTAGTATTTTAGTTCCTGTGAGCCACCAACATACAATATTTGTAATCAGCATTTCCTACACAGTCTGATTTCCTCTTTGTCCCCATGGTCTTCTCATTTCTATGGCTATTAGGAATCTTTCCAGACAGGAAACTGCTATTTTCATTAAGATGCTATCAGAGCACAGATTCAAAGGAATGCTACTTAAGGGGAGTTTTATTCCAAAATAATGAAAAAAAAAGACATAATTTTATGGATTTCACCAAATGTTCTACCCGGAGAAGACAAAACAACTAAGAAATCCGTCTTTCCTCCCACCTCCTTTCACCTACACGATTCTGTTCTCCATTCTGGCTGTGGCTGTTTAAGAAAGCAGATGCTTTAGGAAGCCAGCCAGGGAAAGTTCAGTTAGTTGGGTCCATGAGAGCTCCCTCCAGGCCCCCATCAGGACTTTTCTGGCTGTTAGGACTTCCTGAAACATGAGTGAAAGTAGGGAGTGCAAAGAGCTGGAGGCTTCCTCCGAGCTCCCCGTTTGGATGCAAATGACAGTTAAAGGTTCATTAGGCAGAGCTGGGGAGCAGGTCTGTATCTTCATCCGGTGGGACAGAGGCTGGGCAGGCAGGACTGGTTGAGGGGTGATGGTGTCTGGTTTTCCAGTAAAACTCCTCCCATGACAGCTCTAACTCCCGCCAGGCCTGGTTTCTAAGAGGAAAATGTTTAATCTGAAATTTTATCTGAACATGGGAGGACTCCCTCTCCCAAGATAAACCTATCAGGCCATTCTCCTTTCACTCTTGAATTGTAGAGTCCACTTTCATTCTCGGTTAAGGTTAAGAAAGTCTTAGCGTACAACACGCTGGAAATGTGGTGGTAGGTGCAGCCAATGGGAACTAGGGAGGATGGTGGGAGACATTTAGCACAGACCTCACGTTGCTCTACTTACCCTGGGAGGTTTACAACAGGAGGGGCAACTCTTCTCTGCCTGTCTCTTCAAAGGGAAACCTCGAAACCCTTCCCATCCCAGAGGGGCCAAATCATCCCGCTGCAATCCCATGGGAGGCCCTTGTGGCCATGGCACTAATGCACACAGAAGAAGTGACAGAGTTATGAGCTGAAGAAACCCCCGGAGTTGGGTTTCCAGTAGACACAGGCATGTTATGGAAAACAAGATAAATAAAAGAAAAGGCTTTTGCACCTTCCATTTGAACAGGGAGTAGACTATTCCAAAGGCTAAGATACCTTTCCCGAAAGGACACTCCCTAATTTATTTTTATGTCTCCATGAGTTCCCCCCAACCAGGAGAAAAAAGCAGGCCAAAAGAGGTATAATAGGTAGTTAATTATTCTTTTTGGATGGACTGTTGACACCGACCCTTTCTTTTCTGACGTGGATGCAGAGGCCTCCGTGTTGGTGCAGTGTGAACTAGCACTGACAGAGGGAGAGAATCCTGCAGCCTGGGTGTGACGGGCCATGAACATGTCCTGGAGCCCATAGAGAGGACTGGAGGTTGAGAGAACTTGGGCCTTGCCTGGTCCAGGCCATTTAATTTACAGAAAAGTACATCAAGACCCAGGGAGCTTAAAGATCCCAAAGTCACATGGACAAGTAGCAGCAAGCAAGGACTAGAACCACCCTTTGTTTCCTGGCCACCACCCTGACCCCATGCTGCAGCCACTTGGGGCCACCAGAATCTAAGATGAAAACAAGCGAGTGGAGAAAGACATCTTCAGGGTGGAGAGCTCAGTAGTCCTCAGCTTCCCACCGGAAGAGTTTATAAAAGAGTATGTCCCATTCTTTGGGGTGACTGTTCTTTACTCAGAACCACTTCTGTAGGACTGAGGAGCAGCCCCGGGAGTGGTGCAGCAGCTGTGGAGCCAGTGACGACCCTGCCATTGCAGCTGCTGTTCTGCCAGGCCCCCTCAGGATGACTTCAGATGTGGACTAGAAACGTTCCTTGTTAAAGAACTGGAGAATGGAAATTGTCCAAGTTGACCACAGTACATAGCCTTGTTACTGGAGCAGACGAAGCAGTGTTATTTGCTAGATTTTGCTTTGAAACATCCCAAGGAAAGACGTCTCCTCTTGGACTGCAGTAAAAATGCTTCATAAAGGGCAGCTTGTACAGGATTGGGGATGAGAGTGTGTGTGCCACACGGTGCCAGAGGGAGGCAGGAGGCTGGGGCAGCTCCTCCAAAGCTGGGCAACGGAGGTTTCCTTGTCCCTGCTGCTAATCTCTGATTAAGCAACTTGGTGAAAATCCAAAAGCTCTTAGGAGAACAGGAGTGGTGGCATTTGCTCTTCGGTGCTTGAAAGCAGATCATGTGAAAACTCTAAAGCCCTGAGAATCAAAGCACAGCCACCTACCTGGTCAGGAAGTTCAAGTGCACTAGGTGTGGGCCCAAGGCTGGCACAAGCATATCCGCCCCCAAGGGAGCTCCCCTCCAGGCTGATGCTGCCTTCAGGCTCAGACACCCACCTGCTCCTGTACCCAGCTGTCTGAGGGCTCACAATGGTCTGGGAGCTGCTTCACTGTGGCTACCATGTGGTGGGAATTTTTGGTTTGTAGGTTTTGTTTTGCTAGAAATGGAGGTGAGCAAGTAGACAAAAGCCCCCTGTGGAAGATTCCTCTCTGTTCTGTTCTCTTCTGTTCTGTTCACCCTGGCTCAGCTTGTATCACCTTCTCTCCCGCCCACTGTCTCTTCCTCCTGTGGCCTCACTGGTCTGGGCCCTCCTCCCTGCTGCTCAGCCCATGTCCTCAGTCAACTCTCAGGCCACCTCTGCAGACAAGCCCTTGCCTCCCCCGATAACCCCCCTGAGCCTTTGGGATTCTCAGGCAGTGGCCAGAAGGCATGCTCTCTGGAAGAGCCAGGAAGCCAGCCCAGGACCGGGACTCTCAGTTATGGGAACACACAGAGTAAGAAAACAGCCTGAGTGTCTTCTTTTAAAGTCTCCTCCTCTTCTCCATCCCACGAGGACTCTTCTGTCTTGTTACTGTATGTCTTGATACTCTAGAAATTTCCTTTTTAAGCCAGATGCCTCAGGAAATTAACAGGCAGTCCAGGAACTGATTCATGGGCACCCTTTTCGACTTCTTTTCTCCTTTTAAAGAGTATGACAGTGAACTCACAGCTCCCCTGATAAGTTGTACGCATGCATGGATGGAATTCAAGATTGTCAGGTTTTTTTATTGTGTTGTCTTTTGGCCAGAATGTCTAATTGAGCTGTGGGACTTTTCCAGACCCCTGACACAGAAGGGTTAGCCAATGGAGAGCAGGCCTTATAAATGTCTTTCTGTGGGAAGGGCCAGTTGGAAGAAAAGCCCCACTCTGGGCTTGTGAACACTAAAGCTGGTTCTCAGCTCTAGAGTGTGGACCCTGGGTTTGCTTCCCAGCTCTGCCACTCACGAGGTCTGTGACCTTGGGCAGGTCACAAAAATCTCTGTGCCTCAGTTTTCTCATCTGTGAAGTGGGAGGAGTATAATCCCCTATCTCATAGGGTTTCTGGGAGGATTAAATGAGCTTTATTTTATAGCACAGTGTCTTAGACACATGGCATTTAATGAGTCTTGGCTATTATTTATTTTATTAATAGTATATGAACTGATTGTGTAAGAATAGTCTTTGTATGGCCACAGGTCCAATCAATCACTAAATTCCTTTTGAGTTTATTGTGTAACCTTTTTCTTTACATGGAAACAACCCTACTTTGATTACTTATTACCAGTCCAGATCAGTCTGATTTAAAAACAGGGCTGGGTGTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGACAGATTGCTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATAGCTGGGCGTGGTGGTGCATGCCTGTAGCCCTAGCTACTCAAGAGGCTGAAGCAGGAGAATTGCTTGAACCCTGGAGGCAGAAGTTGCAGTGAGCTGGGATCGCGCCACTGCACTCCAGCCTAGGCGGCAGAGCAAGACTCTGTCTCAAATAAATAAACAGGAAGGCTCCAGGTATCACGTGCATTTTGCCAGCTTGCACTATTAGTGTTGTGTGTGTGTTTCCCTGGCATGTTTACAGCTTCATAAATTAGCTGGCTGCCCTACAGCATCAGGCAGACAGGAGTGTTTTTTCTTAATTGGCAGTGGGAAAGTGGAGTCGGGGACCAGTGACCCACTGTGTGTGATTCCCACACTGAGCTCAGCCGCAGCCCCCTAGAAATAGGAAACCTACCCTCAGAGGCTTTCCCTTCCCAGCATCAGCAGCTAGAACCATGGGACCCCAGTTAGCCTGCACACGGCCGCCACGGCCCCTCTATGGCCACAGGTTTCTTCATCTCAAGCCTCCACCTATCCAAGGCTAAGGAGGCCAGATGTCGCACTCACCCGCACGCTGCCAAAAAAAAGCAGCTTATTTTAAACCTAGTGTGCTCCCCCAATTCTCCTGTTAACCAGTTTCTCCTGTGTGCTTCACTTTCAG
Seq C2 exon
ATGGGTATGCTTTTTCTCAAGAAGAACACGGAGCTGTTAGTCAGGAAGAAGTCATCCGTGCTTATGACACCACCAAAAAGAAATCCAGGAAGAAATAAGACATGAATTTTCCTGACTGATCTTAGGAAAGAGATTCAGTTTGTTGCACCCAGTGTTAACACATCTTTGTCAGAGAAGACTGGCGTCAGCAGCCAAAACACCAGGAAACACATTTCTGTGGCCTTAGCCAAGCAGTTTGTTAGTTACATATTCCCTCGCAAACCTGGAGTGCAGACCACAGGGGAAGCTATCTTTGCCCTCCCAACTCGTCTGCAGTGCTTAGCCTAACTTTTGTTTATGTCGTTATGAAGCATTCAACTGTGCTCTGTGAGGTGTGAAATTAAAAACATTATGTTTCACCAATATTTAAACATCAGTACTAGTTGTCCTGGGAGAAAGGGAAAGGAGTTTTATGTTGCGTGAGAGGCCCATCCTGTGTAATTGGAGCAGGGCACACTTGCTTCCTGTTGAGTTAACTCAGAGGTTAAGTCCAACGGGCCACATGCAGACTTCACTGTAGGCAGGTTGCTCTCCTGCTTTGATTCCTGTTTTGTGTGTAAAATTGGCATAAACTTCTTGATTGCAGTGAAATCACAAAATTCTCTATCGGGGTGGTCAACCTGAGAACATTTATTTGAACCTCTTAGCCACATTTCCAGCAGGGCAAACCAACTGATGCCCTGGAAGAGTCTTCCGCACCCTCTCCAGGTGCACTCGGCCCAGTCCTGCCGCCGTGTCCAGGCGCCCCTCACCCCCACACCTGCTGCATGGCTGGCCACACCACTCAGTGCATGGCGGCCGATGGGCAGCCAACCCAAACCCGCGCCTTTCCTTGTTCCACTGCAGACTCAGATACAGATGCGAAAAATTCCTTCTTCCACCGCCCTTCTCGTTCTGTAAAGAAAGAAAAGAAACATAGCCTTTCTGCATATATTCTAAACGTCTCTCTGCCTCTGTCTGACATGGGGCCACCCCACAGGTCAGAGTGGTGGTAGAACCCCTTCAGGACTCCCAGCCGTGGTCAGGCTCTGAATACTCCCTTCCCAACATCCAGACTGCTGGGCCTTTGGCATCCACTTACATTAGAACCCACGTTTGTTTCAGAGCACATTTTGGACTTTCACTGTTGGGAAATGAATGAATTTATAACATGCCTGCACAGCGAAGGAACACACCTGTCGCTCTTAGCTCTAGAGTCAGAGGATGAGTAAACCCAGATGCAAGAGTATAGGACATTGAGTGGGGAGAACAAGACGACCACAGAAGTCCTCAGAAGGAGAAGGAAGGACACGGAGACACTGAGAGGAGGACACAGAGGAATCGCCACCAGATCTTTGCAGTAGAAACTCTGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-ATP8A2:NM_016529:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)