MmuINT0021774 @ mm9
Intron Retention
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60266578-60273477:-
Coord C1 exon
chr14:60273386-60273477
Coord A exon
chr14:60266762-60273385
Coord C2 exon
chr14:60266578-60266761
Length
6624 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CTTCCTGTGTGTTTTCATAGATG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GATGAACGAGCGTGACCGTCTGATCAAGAGGCTCAGCAGGAAGACACCTCCAACCCTCTTCCGAACAGGCTCCATCCAGCAGTGTGTCAGCC
Seq A exon
GTAAGTGACAGTGGGTAGCAATGGGTGGCAGGCTGCAGGGTGAGTGGGACAGCCAGGGCAGGGATGGCTGCCAGACCTGGAAGAACGAGAACTTCTGAACAGTGAAAATGGGTGCTCACCAAGAACAGGTATTGATGGTCCATCCACTGGGGCAGTTCAGCTGAGCGCTCTGCCTGTCAACAGAGACGTTCTTAGTGGAGCTGTCACCTGACAGCACCCCACTCCTTTTCCCTATTTCCCAAAATCCCTTGGAGGGGTATAGCCAGGCAGGTACAGAATTAGAAGCCCAAACAGAGAGCATCCATACACAACAGGTTGTAGTGCTATGGCTTTTAGGTCACCATCAAGAGATATAGGTCACAGCCATAGTATCTGACCTAAGGTGGAGGTCAAAGTATGAGGATTGATGGTATCACCCAAAGAAAGCAGTCTGCAAGGGATCCTCCTCTGGACTCATACTGCAGGGGCCCCCTCTGGACTCACACTGCTGGGTTCCTGTCCTGTGTCAACATCTGTAAAATGGGAACATTGTGAGAACCCAGCTTGTGTTGTTGGGAGGGCAAAATGAGAATACATACATACATGGGTATATGTGTGTGTGTATACACATATATATTAAGTTAAATATATTATATGTTAGATATTATATATATAATGTCTAGAAGAGTGTTAGACCTAAAGAGTTCAGTAAATGCTAGGCATTGTGGCAATTATTCAATTAGCTGAATAATCCTGGACAATGTATGTATTTCTCAAAGTTTCTATATTTTTCCTCTGAAGAAGAAAATACAATTATATGACATCCTTATATGCTATCACATGGAGTGTATAAAGCCTTTAGGATGGTTGCATTCATGCCTTGGACCATACTGCTTCCCAAATGAATGTCCGAGAATAATCACAGGAAGAGTATGAGCAGCCAGGCAAGGAGACTAAGCAGGAGGATCACAAGCCAAAGCTGCTTAAGCTACAAAGTCAGTTCAAGGCCAGCCTGGGCAACTCAATAAACAGTGAGATGAGAACTGGAAACAGAGATTGGTGTCAGACCTCTTCCTTAGCATGCAGAAGGCCTAGGTTCATTCTTCAGTACCAACCAATTACATACGTTCCCATACATCCAGGGGACAGCTATAACTATCTTAACAATGACCTCATTTTCTTATAAGTCAACACTTGAAAGGCAGAAAAGGTCTACTGAACAAATACAAGATATACCCCCCAGAACTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAGTCGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGATCATATGCCCCAGTACAGTGGAATGCCAGGGCCAGGAATCAGGAGTGGGTGGGTTGGGGAGCAGGAGGGGGGGTATAGAGGACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAACAAAAAACAAACAAACAAAAAAAGATCACTTCTAAAGTCATGCCTCAGTTACAAAAACACTTGATGGAGGGCTGGTGAGATGGCTCAGCAGTTAAGAGCACTAGCTACTCTTGCAGAGGACCCAGCTTCTATACTTGGCTCCCACATAGTGGCTCACAACCATCTGTGTTTCCAATCCCAGAGAATCTGATATTTCTTCTGGCCTCTTCAGGTACATAGTATGCCTAGACACACATTTAGATAAACACTCATACACATAAAATAACAATATATAAACTATTTAAAAATTAAACCCTTAATGAGTTAGTTTTACTAGAGCCTATTAAACAACTTAGAATATCCCTAGCATTCACAACTAGACTTTCAAGTGCTCAGAACTTTGGGTCTAAAGAGGGCTCTGTAACTTCTCTAAACCTTGAATGTCCCTGTCCAAAGGTCCTGCTGTCACAGACCTCAGCCTCACTGGGAACCTGAGAGACTCTAATCTTCAGTGCTCAGTTGTCACCATGGTTTGTATAAGGGACAGAAAATTAATAAGTCAGAGCCTTTAGCAATGATGCTAATTGGGGTCAATCATCATGACAGAGCCCTTAAAACAGAATCCTGCGATCATATAAGGAGAGACAGAAAGACAGAGACAAGCAAAGACAGAGAAACACACACACACACAGAGAGAGAGAAAGAGAGAGACAGACAGATGGACAGAGAGACAGACAGAGAGAGACAGAGAAACACACACACAGAAAGAGAGAGAGAAAGAGACAGAGAGAGAAAGAGACAGACAGACAGACTGAGAGAGAGAGAGACAGAGAGACAGAGGCAGGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGCAGAAGCCACATGCACGTCCCTGTCTCTTGTCATGTGATGCCTAGTGCCTTGTCATTGGGATCCTGCCAGCAAGTCCACTAGATATGGTCCCTCAATCTTTAGCTTCCAAATCTGTGACTCAAAATAAATCTTCCTGCTTTATAAGGTTCTCACCTTTGAATGTTTCTTATAGTAACACAAAATAGACTAATACAGTTCACACGACCTGCCAGTGTGCAGTAGTGATAACTGAGATCGGTGTTTACTGCACACTCTAAACTTCCTCATCAGCCCAATGGTTTCCATCCTCTCCAAAACTCTCCTTTTGAAAGCTATGATCAGATCTCAGGTTCAAAGGAATAGAATGTAAGAACTTTATTCTGAAATTGTGAGTGGGTAGATGTGGAATGACTTAACTTTATTTGCTTCACCAGATGCCCCACCTCAACAAGACAAAACAACTAAGAAATAAACCACACAGCACTTAGTCTAGAAGCAGGAGCTAAGAAGGCTCACAAGAGGGTCAGGGAATGCTTCCTCCTGGTCCCCATCTCCCAAAGTGGAAAGTGCAGAGGGCTAGAGCTTCCCTTGACTCCACATAGGGGTGTCCCCCCAAAATAACATAGAAAGAAATCTCCTTCCTGGTCAGGCTTGGGAACTGTCCATGAGTGGCACCCCCACCCCCACCCCACTCACGTCGTCCATCTTTTCACTGACAGCCCAACTCCCACCAGGCCTCGTTTCTAAGAGGAGAAATGTCCTGCCAGGGAAACCCTTACCCCTTCCCAGGATAAATCTATCAGCACGCCCTCCTCCCTCCTTCCTTTCATTTTGTACTTGGGGGTGAAGCAGAAGGTTATGGCAGGCAAGTTCCCTGCTGCCCATCTAGAGTCCCGACCCTCTTTTTACTTTCCATCCTGAGACAGGCTCTCAACTGTTGCCCCATCTGGCTTTGAACTTGTCATCCTTCTGCCTCCAGAGGGGCATTTGGTCATGCTTTGTTCACCTGAGAAGAGGACAGGATGAGAGTGTTTGCCTACGTCTCTGATGAGAAGCCTAGAAACCCAGTGTTACTGAGGCACCCCCTTGCCAGCCCACGGTACCCCGTGAGAGGAAGATTCTTCTAGAGTTAGTTAGATGATGTCCAAAAGAATGCCCCTAACTAGTCCTTATTATTCACTACTTGTGTTTTGATGACCTTAATAATGTTTATTTCTAATGTGTTAACATCCATTCATAACTTTCATCCATAACTATCTACACATGTGCACGCGCACACACACACACACACACACACACATCCCAAAGACCTAAAAGGTTTAGCAGTTTTTCAAATTGGACTGACAATTGAGACAGGCTCCTTTATGGCTTTTATGCAGAGCCTCTCCCTCCCCCCGCCCCCCATGCAGAGTGAATTAACATGAATCAGGCCAGGGAATGGCTGTAGCCTCATTTATGATCATCCACAGATACACCCTGCAGCCCTCAGGAAGAGCTGAAGCTATAGGTCATGCCTCTTCCTGGGCCATTTACCTTACGTAGAAGAAATCCCAAACCGAGAGATTCATGAATCCAACGTTACAAAGCCTAGTAATGGCCAAGCAAGGACAAGACGTTCCTTTTTGTGCCCCTGGTACTCCATCCATCCGGTCACCACCCAGGATAGATGCCCAGCCAACCGACAATGCCATCTTCTCAGAGAGAACCCACTGGTCTTCTCCCCTCTTGCCTCAAAATTATTTCTAGAATCTCTCTGGGAGGCCTGCCCTTGATCACAACGACTTCCTTCACACTGAAGGATCTCTGCTCGTGGGTCGCAGTAGCCACAGCCACATTGCAAACCAGAGACATCATTCCAGCAGTACATCCCATCCAGGGGCAGCTGCTAGGACTGATGACCCTCAAGGACACACAAAACTTTCCTTGTTAGAAGACTAGAGACTGAACATTGTCAACTTTAACAGTGGTAAGCAGCCTTGCTACCAAAAGGCATGCTGGTTTTCTTTTACCAGATTTTGCTTTGAACCATTCCAAGGAAAGGCCATCCTCTTAGACTGCAGTAAGAATGTGTCACAAAGCACACCTTGTGTGTGGCAGGGCAGGGACCTGAATGGAGGAGGCAGAAGGAGGAATAGCTCCTTCTATTCCCAGAGAGCTCCGGCAGGCCTTGGCCCATTTCCGGAAGACCTTTGGAAATGGAGGGGAGATACAGCCTTCTCTCCTTACCCCATGGAAGCAGGATGTGTGGAGCAAGGCCACCTGCTTGTATGGACAGAACCATAAGAAAGCCCCTGTCCCCGGGGCCTATGGGCAGGGTGTGGCTTCAGTGGAACTTCCCATCCAGGCTGGCTTCTTCATCTACTCAAGAACCTACCCTACTTTTGGGGGAAGGGGTACCAGGCATATGTGTAGGTCAGAGGGCATCTTTGTGGAGTCATTCTCTCCTTCCACCTTTAGGGGGCGTTCTAGGGATCAAAGTCATTTTCCCAACTTGCACACCAAGCAGAGACTGAGCCCACTCCCCAGCCCACTGCTGGCTTTTGCCTGGCTCTGGGGGGCTCACGCTGTGTGGAGAGCTGCTTCCCACGTGGATGGGCTTCCTGTTTGTTGGGAGTGGGCAGCAGGCAGGCGTGTCTGTCATCTGTGCTCACACTGGTGTGACCTTCCCGCCTTCCCTGCTCTGTTCCTCTGACTCCATCCTCCCTCCTGGGACTGCCTGCTCTGCAATCTTCTCCCTTCTGTGCAGACCCAGTGTCCAAGGGAGCCCCCAGCCCACTCTGCACAGGAATCATTGGCGCCCACCCAAGCCTTTAGGCTTTCTGGGCAGTAGCTGGCAAGCTCACTCTCCTGGAGGGCAGGAAGTCAGTCTGGGGACATGGATTCTGCGGTCTTGCCACACAAATGAACAATAACATGGAGTCTTCCCCACAGCCTTCTGCCAACCTGTCCTTCTTGTGACTGTGTCGTCACATCCTGCAGACTTTACTCTCTGTCAAACAGCTGAAAAAACTAACAACCCAGTTAACAAATTGACAGCTGCCCATGTTTTCTGATTTCCTTTTCCTCTTTTAGAGAATATGCCAGGAATTGGGGGAGGGAAGTTATGACCCAGAGCAATTACCTAGGATGCAGGAGGCCCTGGGTTCTATCCCCCACACTGTAACAAAGAGAAATCTTTAAAGAGTCTGTCCCAAATCAGGCCACTCCATTGATAAAGCACAGATTGGAAGACAGGGTGCCTTTACAACCCTCAGGTCTGACTGTGCTGTCTTCCAGTGGAGACATCTAACTGTGCAGTGGGACCTCTCTCCCTGCCACGGCAGGAATTGTCATAAGAAAGCAGGTCACACTGCTCAGCTGTGCTTCCCAGTTCCGCCACTCACTCGGTCTGTGTCCTCGGGCAAATAAAAAAGTCTTTTGGCCTTGTGAAGTGGGATCATAGTGTCCTGCGTCAATGGGCGGAGTCCTTGAGCTATTTTCCTGCGGTGTGTAGAACTGTGGTGGTACTGGTTTTGTTAGAACCCTGTGTGGCTCGGCCATGTTTAGGTCATGGCACTGCTTCGTTGACTTAGCAGCCAGAACCAGTCCAATTCACGAACTGGGACTCTTTGTAAGCTGTGTGCTTGACTGGCTTCTCTATTAGGGATGTTATTCCTGACATGTTTAGGGCCTCATAAAAAGCAATAGGCAGATCAGGACATTTCCTCTGATCAGTGGTAGGATAGTGGGCTCACAGTCCACTCTTCCATGTTTACGTTTTCCACACTGAGCCCCCAAGAATTAGAAGACATACTGCTGTGGTTTCAATGTCCTCTGTTACACCTGTGGGTGTGAAGTCGCTATGGTGACGGAATTGAGAGGGAAGCTTTAAGGGTGACAGAGTCACATGAGCTCTATTTCCAGCCAGTGGATTGTCACCCATTAGTGGGGTGCTGCCCCTCCATGTTATGTTACAGTAAAGAAATCATCAGGTACTGCCTTTTGATATTGGACCCCCAGCCTCCAGTACTGTAAAACAAACTTCCAGTCCGTACTTCACCTAGTCCATGGTATTTTGCCACAGCTGCAGGAAGCCAACGCCTTCCGTTCTGAACCATTCCCATCCGGGTCTCGTCAGCTCCCTGCCCCGTCCCTCTTGGTCATGGTCCCCTTTGCTTTTGCAGACCTCTTCATCTCAGGTCTCTGTATCCAAAGCTAAGCAAATCTCCCATGACCACACAGTTCAATGGGGTCTTCCAGGAAGCAGTTTGTCCTTAGTCTAGCATGTTCCCTCCTTCTCCCGCTAACGCTTCTTCCTGTGTGTTTTCATAG
Seq C2 exon
ATGGGTATGCCTTTTCTCAAGAAGAGCATGGAGCTGTTACACAGGAGGAAATAGTCCGCGCTTATGATACCACCAAAGAGAATTCAAGGAAGAAATAAGACGCAAAGTTTCCTGATGGCTCCAAGGAAAGAGATTCAGTTTGTTGCACACAGTGTTAACAGTTTTGTCAGCAAAGACTGGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-Atp8a2:NM_015803:35
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: