GgaINT0112009 @ galGal4
Intron Retention
Gene
ENSGALG00000016020 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:HGNC:2065]
Coordinates
chr1:105367873-105370387:+
Coord C1 exon
chr1:105367873-105368054
Coord A exon
chr1:105368055-105370223
Coord C2 exon
chr1:105370224-105370387
Length
2169 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TTTTCTTTTATTTTCTTTATAAA
3' ss Score
1.36
Exon sequences
Seq C1 exon
ATCTGGAAAAATCTTTGCTTAAAGCCCTGAGGAAGCTGGACAACTATTTAAATAGCCCCTTGCCTGATGAAATTGATGCTTACAGCACTGAGGAGATCACTGTGTCCTGCCGCAAATTCCTGGATGGAGATGAGCTCACCTTAGCGGATTGCAACCTCCTACCAAAGCTCCACATAATTAAG
Seq A exon
GTTTGCATTTGCTTTTCAGCCTCCTGAAGAGAAAGGCAGCCTAGAAGCTCAGGTTCTTTTCTAAAAGGCAGAGGAAGTCCGTGTATTTTCTGAAGCCACACGGTAGCTGGGTAGGGACAAGGAGTGCTAGTGCACAAGGCCATTTCAGTGCAGCACAGCTAGGCAGATCTTCACATTGACAGCTGGAGCTGGAATATCTGGTTTCATATTTGAACTGTGACTGCGTTCTCCAGGCTTCTCACAAATACTAAATGAGTACTATATTCAGTGCTGTAGAGAAATATTTCTATTTGCGTTTCACATGCAAAGTGCCACAGATTGATAAGATTAAATGATCTTGCCCGTGCTAAATCAAGAAAGCAGCAAATGCTGAAATTTGACCATCTCTCCCACTTTTAATCCAAACCTCTTTGTTGAATATTACCACCAATACCAATAGCACTGGCAGCCACCATCTTCCAGCCAAGTGCTCCAAAGCACCCACGCACTCCTAAGGGTCTGAGGTGTCTGGGCATTGTTACAGCCTGTCCTGTGCTACCCTGGAGCCACACAGGCTCTGGAAGGGAAGTGGCCATACTGAAAACTCACGTAGTTTCCAAACACTTCAGAAAGTTTCATTCTTGACTACTATTTTGTCAGGGAAAGGGTGGATGGAATTGTTTTCAGACTCCCTCAGGGGTGAAAGCTTTCCCAGGAGGTGTCCTGGTTGAAACTATTCCAGCGACAGAAGTAGGGCAGTGAGCCCTGTCCTGCTCCCAGCCACAGCTCAGGCACAAGGAAAACACATTTAAAGGATGGTAGAGGGTGAATGTCAGGTCATCCTTGCTGAACCACAGGAAGGAATTAGATGTCAGCTGGTAGTTGTTTCCTCCAGCCACTCAAAATCTAATATAAAGGGGAGCTCTGAGAAAGAAGGGAACAGACTCTTTTAGCAGGGTCTGTTCTGACAGGACAAGGGGAAGTGGGTTCAAGCTAAAAGAGGGGAAAATTTAGATTGAATATAAGGAGAATGTTTTATACTCTAAGGGTGGTGAGGCAGTGGAACAGGTTTCTCAGAGAGGCAGTGGATGCCTTATCCCTGTCGACACTCAAGGCCAGGATGTACGGGGCTCTGAGCACCTGATGGAGCTGTAGGTGTCCCTGCTCATTGCAGGGGGGTTGGACCAGATGGCCTTGAAGAGTCCCTTCCAGCTCAAATGATTCTATGATTCTATTAATTTTCTAAGTGTGAGTCAGTTTTATTATTGTAAGAGAGTTAATTCTGTTTGATGCCAGCTCTTTTGCTGCTTTAAGCTGCATCTCTTCCATGGTCTGATGGTGCATATAGCTCCACAAAGCTCTAGCAAAATATTGATACCAAATTAATCCTTTCAAGTGAGTTGGCTTGTTAGCCAGCTTTCTTCATCTCATATCTTTCCTTTCTTTTTCTTTTTTCTTTTTTTTTCTGCCTTTTCTGCCTTTTTCTTCTTTTCTACATTGTATATAAAGATAGTCTGTTATATATTGAAAATTAAAAATGTCCATAGAATAGATTCAGTTACATTTAGGTCGCGTCCCTCTCTACTCTGCCCTCATGTCCCCATCTGGAGTACTGCGTCCAGGTCTGGGGCCCCCAATACAAGAAAGACAGGGAGCTGTTGGAGAGGGTCCAGAGGAGGGCTACTAAGATGCTCAGAGGGCTGGAGCACCTCCCCTATGAAAACAGGCTGAGGGAGCTGGGCTTGTTCAGCCTGGAGAAAAGAAGGCTGTGGGGTGACCTCACTGCAGCTTTCCAGTACGTAAAGGGAGCCTATAAACAGGAGGGGAGTCAACTCTTTACAAGGGTAGATAACAGCAGGACAAGGGGAAATGGTTTTAAGTTGAGGGAGGGAAGATTTAGGTTGGCTATCAGGGGGGGAGTTCTTCACAGAGAGAGTGGTGAAGTGCTGGCACAGGCTGCCCAGAGAGGTTGTGGATGCCCCATCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAGCCTGCTCTAGTTTTAGATATGGATGTTGGTGGCCGATCCTACAGCAGGGGGATTGGAGCTTCATGATCCTTGGAGTCCCTTCCAACCCAAGCCATCCTATGATTCTATGATCCTATGATTCTATGTATGTGTGTAATAAAACGTTTTCTTTTATTTTCTTTAT
Seq C2 exon
AAAAAGGTTGTCGCAAAGAAATACAGAAATTTTGATTTCCCACCTGAAATGACGGGGATTTCAAGATACTTGAATAATGCATATGCAAGAGATGAATTTACAAACACTTGTCCTGCTGATCAAGAAATCGAGTATGCATATTTGGACGTCGCAAAGAGAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016020:ENSGALT00000025807:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(54.5=100)
A:
NA
C2:
PF134101=GST_C_2=PD(22.7=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]