MmuINT0037317 @ mm10
Intron Retention
Gene
ENSMUSG00000022949 | Clic6
Description
chloride intracellular channel 6 [Source:MGI Symbol;Acc:MGI:2146607]
Coordinates
chr16:92530756-92541243:+
Coord C1 exon
chr16:92530756-92530937
Coord A exon
chr16:92530938-92539434
Coord C2 exon
chr16:92539435-92541243
Length
8497 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
CGTCTCCCCTTGATTTGCAGATT
3' ss Score
10
Exon sequences
Seq C1 exon
TTTATGAAAAGAACCTACTACGGGCCCTGAAGAAGCTGGACAGTTACTTAAACAGCCCGCTGCCAGACGAAATCGATGCCGACAGTTCAGAGGATGTCACTGTTTCACAAAGGAAGTTTCTGGATGGGGATGAGCTCACACTGGCTGACTGTAACCTCTTACCCAAGCTCCATATCATTAAG
Seq A exon
GTTTGCTTTTGCTCTTGACAGCTGGCTGGATGCATGAAAGAGGCTTTACTGGTGGTTTTGTTTTGTTGTTGTTCTGACTTATGCTGAGGCCAGGCATCGAAAACAGGCCTGGCCAGGAATAATAGTAGATCCAGTCCACTGTGGGTGGTACTATTCCCTAGGAAGAGGGTCCTGAACCACTCAGGTCAGGGATAATAGTAGATCCAGTCCACTGTGGTTGGTACTATTCCCTAGGAAGAGGGTCCTGAACCACTTAGGACAGGGGTAATAGTAGATCCAGTCCACTGTGGGTGGTACTATTCCCTAGGAAGAGGGTCCTGAACCAGTTAGGTCCAGTCCACTGTGGGTGGTATCATTCCCTAGGAAGGAGACCCTGAACTACTCAGGACAGGGATAATAGTAGCAAATATCAGTTTGAATCGAAAACTAGTAGTTTATAGTCTAGGCAGCCACACTAAACACATGGAACCAAGAGCTCCAGGTGTCTTCACAAAGTACCTGTGAATGTGCACCCTGCCCCAGGTCCTCCCTGAAGTCCTCAGTCTGAAGAAAAGCTCAAGCGCACTCAGGCTCTCTGTGGCTTGAAGATGATGCATTGTTGATAATTCTAGGGATAAGCAAAGATGTTCCAGGGACAATGGAGGGGTGTCCTATAAACTCTTAATATCCCCCCCCCCACACACACACAGCTAAGAGCGGCTGATATATCTCCTTGGCTGAGCCTCTTCTATAGCTGGCATCCTGTCTTCCTAGGTAGTTGGATATAGTAGAAGAGTCAACAGACACAGACAACTAGAGCTGTTTGGGGGAATCTTTTAAAAGTTTTTAAAATGTTTATTATTATTATTATTATTTTAATTTCAGTTCTCTGATTGGTCACTGACCTGGCTAATCAGAACTTGTTGTGGCATCCGTGAGGATTCCCAGGCAGCTGGCTCCACAGCTGGCGGCTGAGTTGCTTCTCTCTCTCCACCTCTCTGTTACTTGTGGGTGTCAGTTATCATCGTGACTGACAGCCATCAGTGCTATGCATGTGACCTTCAGATGTCTAAAAAGGAAGCCTGTGCACTGGGCATCTTCGTTATTATTAAATTCTCCCCTAGGCCTAGAGCTAGTGTAGGAACATAAAGCGAGAATAAAGAGGCAACACAGGGAAACACCAGTCTCTGTCGTGCTCTAAGCTCGTACATATTTGGCTGGTCAGATCACTCATCTGGTTTCAACAGTCCATGGTGGGCTACCTGCCACTCTTGGTCACTCCGTGTGAGAGCCTCATCTTTCTCTTCCTGAACAGCTCTTCTTGCCCTCCCGCTGAGTCTCTAACTCACTCCTCCTCTCTTACCTGTGTACTTCAGAGAACTACTTACAACAGACATTGCCAACTCCTTGAGTGAATGTCTTTTCAGTAGCTTCACTAAGGTCCCAACATCCAAAGTAACGAAAGATGCTCAACTCTTGACAATCTGCTGACTCTAGACATCGTTTTCCAGTGATATTTATGCCACTGTGTTGTGATTTAGTCTCTTACGGGAATGAGTTTTTAGTCTTTGCCGTGAATGATATAGCACCAGACAGGTATGTGCAGGCTGAAGAAGAGATGGTGGTTACTATGACAAAATGCTTGAGAAAGTCTGTCAGAGCAGAAAGGTTTACTTTGGCCTGTGGATTCAGAGCTAATAGTGCATGCTGAGTTGGCTCTATTGATGTTAGGCTCGTGGCAAACGCTGTGGATCAGGAAAGCAGCTCGTCTGTGGAAGCCAGAAGGTAGAGAGAGCAAGAAGGAGTGTCAGGAGACAAGATGTGCCCTTCAAAGGCCTCCAGTTGCCTAGGCACCATTTCCTATTGCCCAACCCACTATGGTTAATCAGTCGGTGAGGCTAGCTCCCTCATGGTCCAACCACCACTAGTTGTGGACCAAACCTTCATTTTACAAAAGTGTTTAATATCCAAAGCACATTGGATAACATGAGAAACATCTCAGGCACACAGCTCCAGTCACAATGTGCTTTATTCATAAAAAAATAAGGGGGCTGGAGAGATGGCTCAGTGATTAAGAACACTGGCTGTTCTTGCAGAGTATCAGAGTTTAGTTCCCAGCACCCATGTTAGATAGCCCACTACCACCTGTAACTCCAGCTCCAGGGGGGTCCAACACTTCACCTGATCCCTGTGAGTGCTTGCATTTACATGAGCATTCGACATACACATATATGTAAGAAGTAGAAAGGATAAGCTTTGGGGTTGGGAGTAGGGCTAAAGCAGTCCATGGTGAGAATGAAAGACCTAGAAAGAGAGGCTTCAAAGCCATTTAGCACTTAAGATACTAAACTGTTTAATGATCTTCCAGCCCAGAGTAATTTTGAAGGAAATGAGAATTAGTCCAAAGGAATTATGGTAAAAGATGAGAGTGAGGAGATTTATAATTTATTTCCTTTCCTGAAACCCACTGAAAATGACATTAAAAATACAGTATTGGCTTCATCTTTCACGAGCCTACGGAAGAATGACAGATCATCCACAAATGCAAAGGAATCCAAGAGACAGGGTTGAGTGGTACATGGCTCCCTTTATGGTTAGAAAAGTTCAGGGTTGTTAAGAAGTAAATAATGCAATCCTGAAATGCCTGAGACCTTTGCATAGAGGGTGGAGCGTGAGCTGACAGTGAGGCAAAGATGACAGAGAATACTCGTGGGTTGAGATCTCTAAAGAGACAGAGTAGGAGGAAGATCATACAGAGATGATGTCTATACAGCCTGTGCTCCGCTCCTCTTCCACACTGTGTCCTGGAGGGAGGGAGATGGGTTAGAAGAGGAAGGATCTGGCATTCTGTTTTGTGGCTGCTGAACAGAGTAAAAAGAAAAAGAAAAAGAAATAAGAAAAGAAAAGGAAAGAAAATTGAAGAAAAGAAAGAAAAGAAAAGACGAGAAAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAGGCATGCAGGCAAGAGTTCCCTGACTCTAACTCTCATGCCAACCCTATCTCTAACCCTAACTCTAGCTCCAGTATGTCTCTGAGGCAGAGTAGAGGTCAAAGTTTCCTGAATGAATGCTCCAATGGAATACTAAATTTGCTCTACCAACTGACCTGTCCCCACTCTCCTATTGCTCTACATGATTTCTAAGTAAATTGTAGCTCCAGTATGTCTGCCTCACTAACTCCTGACTAGCCACAAGAAGGGGCCCACGAATGGCCACTGTATAACTATAGACAATAAAAGTGAAAGAAAATGATGGAGGACCCAAAATTAAAGAAAGGAAAAAGGGGGACGGGAAATGCATATTTGGCAAAGACTTGTCCCGGGAAGTCAAAGAACATTGTATATTCTTCTACAACCTTGAAAAGAGAAAAAGATATGGACTTCTTCAGAACAAGCTCTAACACAAGACACTGAATGTCGAAAAACACAGTACCATAAATGGATGCAAAATGGATGCAACTTAGGCCAGAGGCATTTGAGTAAGAAAAGACAGATAACGTCCTAAAGGAATAAAAAATTATGTAGAAGTAGCAAGAAGCAGACAGAAGGACACCACAGAAAGTAGCTAGACTGGATCTGAAAATAGATCATCCAAACTCAGATATTTATATTCAGAATGACAGTAGAGGGAAGGAGAGCAGGAAGAGGGCCATCCAAGCAGGGCATTATTTTAATATAAAGTAGAGCCGGGCCCTCTGATTTATCTAAAGAATAGTCCTAATTGATTATTTGTGCTAGGATGAAACCCAGGAACTTGCACACACTAGACAACAACTGCTCTACCACAAAATTCACCACCAATCCTTGGTATTTTGAGACAAGGTCTCACTGTGTAGCTCAGTCTGGTCTCACTCTTGCCCTTCCCCAAGCCTCTGATGAATCCTAGAGCTACAAGCGTGTACATCATACAAGACTCCCTATTTTTATATCATTACTGTATTTGTTATTTGCTGAGTATCAAACCCAGGGCCTTGGACATTTAAACAAGCACTGGTGCATCCTTAGCTCCAAACTTCTGCTTTCAAGGTCATGCCGTATTTAGGAAGCATATTCCCGGGACAAACAACAGAATGAAACATGTTTGATACTTGACAGAGCTTCTGTCATAGAAAGGAAGCATTAGGAACTGAATCTGTCCACTTTCCATTACTATAACAAAATGTTTGGGGCAGGGGTATGCAGAAAAGCTTATTTAGCTCACAGCTGTAGACATTCAAGAGCATGAGTCAACTCTTATATGGACCTTAGGACTTCCCAGTATGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTTTGTGTATGGGGAGGTGATTATAGGTGAGACAGGATGTGACCACAGGTGAGACAGAAAGTTACTATAGGAGAGAGAGGAAGTGACCATAGGCAAGACAGGAAGTGACCATAGGTGAAATAGGAAGTGAGCATGGGTGAGACTGGAAGTGATCATAGGTGAGACAGGAAGTGAGCATGGGTGAGACAGGAAGTGACCATAGGTGAGACAGGAAGTGAGCATGGGTGAGACACGAAGTGACCATAGGTGAGACAGGAAGTAGCCATATGGTGAGATAGGAAGTCTCTGTATTGGTGATACTGGAAGCATTCAGATTTGCTCTTGTGTATCAGACTTCCCACAGAATCAACCAGATTCCCATGAGAACTATCTCAGTCTTTCCAGATGGTATGCTCCAGTGATGCCCTCTTCCAAGCCATGCTTTTTGAAGGCCTCACCACACATTGCTCTACTGAGACCCAAACTTCCAACCTGTGACCCGTCAAAGAGCATACTCAAACTAGAGCAGACAGCCAGACAATAGTACTTACCAGCAGCAGTGATGGCATAAATAAACAGTAGGATTGCCTACAGGAGGAAGGCATCTACAGTGGCCTCAAGAACCTTCATGGCATCAAAAATCAAACAGAGAGGAAACGGAAGGCTGTCTGGTGTATTATGAAAGAGTTTTATATCCCCAGTTATTATCTCCCCAGACACCCAGCCTCAGTAAAATAAACACTCCCGAGTAGTAAAATTACTATATGTTGAAATACTCAAATGATCATGAAAATAGGAGACAGAGACAGATAAGATGTGCTTTAGAAAAGTCTGTTAAGAAACAGGGAACCTATCTTGCTCTAATTTAGAGCACAAATTTACTCAAAGGACACCGGCTTGCTCATAGACTGCCAGAAGAACGAGAAACTTGGGCTTAGGGGCAACCTAACTATACAGTCACAACACACACACCTCTGTCACTTACCTGTTTGGTTTCTCTGTTCTCATGTGTTTGGTGAACACACGTATCAGGGGTTTAGATAGAGGGAATGATATAATTATATTTTAATCAAAAGTGAAATAAATTTATAAAAATAGATTGCAGTTGAAAATTCAATTAGAGGGACAAATCCTTTCCATGAGCTTCTTAGCTTGGAGCTGCAGCCCTTTCTGTGAGGAACCAATGCTGACACCAGTAGAGAGACCAAGCAGCAGCTCCAGGGACAGAGTAAAGTTAGAATATGGTAAAGGAAAAGAGCCAGAAAGACAAGGAGACATAGTACATTCCCTCCTTTGTCATTAACAGGAATCAACTTGATAGAAAATATTAGGGAACTCTCAGAAAGAACCAAACTACAGCCTCTGGGCTACTGAAGCGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGCGCTTGCGCACGTGCACACATACACGTAGGAAACAAAGTAGTATACTCAGAAATCATGATGGGAGTGGGGATCAGCGGCTAAAGAACTTATCACATAAGCAAGAGGACCTGAGTTTGATTTCCCAGAATGCCTGCAAAACATGGCAGATGAGAGGCATCCCATCTCCGGAAGGCAGGGTAGGAGAATCACCGAGTTGCTGGCATTTCAAGTTACAGGCTCAACAGGAGATCTTGTGTCAAAAATGAGGTAGAGAAAAAGGGATTGGGGTGATGGCTCAACAGTTGAGACTTGTGCTTGGCAGAGGCCTTGAGAGTTGCCACCTGCAAATCCAGCAGCAGGGACTGGAATGCCTCCTCTGGCCTCTAGGGACCTCTGCACACATGTGTACACACCCATAAGAAATACTTCTTTAAAACAATACGTTAGGGCTGTGGTTAAGAGCATTGGCTGCTCTTCCAGAGGACCTGCATTTAGCACCCATGTCAGGAAGCTTATAGCTGCCTGTAACTCTAGGTTCATGGGATCCAACCAAGACTCACATGCACAGACCACCTCCCCCAACCCTCTCACTTCCATACACCATAACTTAAAAAGTAAATCTAGAATAGAACTTAAAATGTAGTTAGCCATCCAGAAAGTCACCCAGTGTTGATCTGACTCCTACACAGTATTCACACACTTGCACACATGCACATAGAGATATATACAAACAGAGAGAAATTATAAAAGCAAGTGTCCAGATATTTACCAAGTTTCCTCATTAATATTAAAATATCCAGGGCTGATGGCACTGGCTCGTAATACCTGCCACCCACGAGGCTGACGGAGGTGGACTGAAAGCTCATTCCTGAGTGGGTTAAAGAGCGAGTTCAAGGCCCACCTAGGCAAGATAATAAGACCCCCATGCCTAAATAAAAAGGAGAGAGAGAGCTGGGCTCAGCTGGGGGAGGGGGTCCACAGGGGAGCAATTGCTTAGCGTGCATAAAACTCCAGGTTAATATTTTTCAAAAAGATCACAAGTGAGTCAGGTAAGCATCCACCAAAGAAATAAGAATTCTTGACTGGAGCATTCCTAAACCTGCATTCAGACAAAGAACACCAGACCCTGTCACAGGCTCTCTAGACATTCCTTGGTACTAATTTGCTGCCACACTGCATGAATGGTGGTCGCTGTTATAGTCTGACAATTAAGTACTGAGATCTGATTTGTGCTGAGTCTCATGTTACATTCATTCCAACATCCCAGGATCACTGGGAAGAGAGGGGACATAGCAGACATGACCTTTGTAGCCCTGGATCCCTGCAGCAGATGGAATCGTGCTTCCCCAAGCTTTCATATCGAGGTCCTAATCACTATTACCCCAGGATGGGATTTATTTGGCATGTGGGTCTTCAAAGACACAATTAGCTAAGTTGAAGGTGCAGAAGAGAAGGTTGGACCCTCCTCCAATATGGCTTGCTGCTAAAAGAGGATTTAAGATAGGGACACCCAAACACAGCAAGAAGACATGCACAGACTCAGCTGTACTTCCGTAGTCAAGAGTTTAAGAAGCTAGGAGGAAGGCCAGAGACAGATTCTAACCTAGAAACTTTAGGGGGAGCAGGGTCCCGCTCACATCTTGACTTCTCGGACTATGATAGAAACCCTTTTTGTTTTCAGTTGTTCAAGTGTGCACCACTAACAGAGACACACATCCCTGTCACTGGACACTGTCCTTAGTGACTGATTCCCCACCTGGCCCTTTCAGGACCAAAGAAGCCATCTCATGGGGCTGAGTCCCTTAGTAAACCCGCCCACCTGTCCTTTTCTTGCTCCTACTGTGTCCATGACGACGAGGAACAAGCTGTTTTGTTTATGCACTTTTGCACACAGTAAGCTCATGGTTGAGCAATCTGCTTAGAAGAGAGTAGTGGACTTCTGAATACCAGACGTTAGGGATTGCTGGAGATGGGGTTGAACAACTAGAAGAGAGAGCTGATTAAAAGATCCTGATGAAATCTAAAATGAAGACCTCCCGTATGTGTGTCTTCATGTACTACGTAATGCAGTAGCTGACACCTGCCAAGGCATTGCCACAGACACAGGGAGAAAGCCACTGGCATTCTGTACACACGCATGGCTGGAACCCAAGGATCACCTCTGGGAAACTTGATGGGCAAGCTACAAGAGGAAGGCTGACTTTGGCTTACAGTTGGATGGGATAAAGCCCATGGTGGCAGGGAGGGCATGGGGGCTGGAATGTGAGGCACTTGGTCCCAAGGCATCAGCAGCGAGGACACAGAGCACTATGGGCGCTGGTGTCCAGCTCCTTAAGCCCTTTCTGTTCAGTCCAGGATCCCAGCCCATGGAGTCGTTCGTGTCTTCTACATTTAGGGTAGGTAGGTCTTTCAGTCTCAATGAACACACCCTAGAGGCTCCCTCATTGTGGTGCCCACAGGGTGGTCTCCCAAGTGATCCTAGATCTTATCACAGAGCACTTCATTTGGGTCCTGTACTTCTGTTACCGACTCCCCCTACCCACCCACCCCCAGACCCCCACCCTTCTCCCAAGGTGCCCTAGCAGAGTTAAAGTGCCACTATGGGTGGCCCACATGACCATAGGATGACATCAGAAGTTAGGCTGTGAACCTCCCAAGGATGGGTTGCCTGACCTGATCACCCACGTGAGTGGCCTGTCACCTGTCACCGTCTCCCCTTGATTTGCAG
Seq C2 exon
ATTGTCGCCAAGAAATATAGAGATTTTGAGTTTCCTTCTGAAATGACCGGCATTTGGAGGTACTTGAACAACGCTTACGCCCGGGATGAGTTCACTAACACGTGTCCGGCCGACCGGGAGATTGAACACGCATATTCCGATGCAGCGAAAAGGATGAAGTGACACTGGCTTGCAGCAGATGAGTGGGCGGGCCTTCCAGGAGAGCCCTCTGTTTCTTCCCTGAAACAGCTCTTTTGCGAAATAGCGCTGACTCTCTAAATGCCACCATAGGATGCGGGGCCTTGAGATTTGTCTACTCATTCCTCCTACACTAATTTATATCTTTGAGATTCAGTTCTCTGGTAATCCATGTTTAGGGCGATAGTGTTTTGTAGCTTGTTTCAGGGCAAACAGGCTTTGACTTAAGTTCTTGGCATTTTAAAGAGGTTAGTCTTTTTTTTTTTTTTGATAGTTTTCATAATCACCTGGCTTGTTTTTCTCTTCTCAAGTATCAGTTTAAAATGGAGATGCTGTTTTATACTTATAGAATACTTTAGAACAGTATTAGAGGGTATGAAGAAGAAATTTTTTAAAATCACCTAAAATTCTATATATTTTCTGATGACAATTTGATGAATGTTTCCAGAATCGGTCAATCTTTCATGTATGCCTGTGCTCATGCGTGCACATACATCACATATAATTTCATTCATTTGTGGAATGGCATTTGTGTAAGAAAGCAATGAAGGGATCTCCTGGTTCCTTAAAGGTTATCACAGAAGACTTAAAACAAAGGATTTAGCCCTGCTGAGCCACACAGGGGCTTGGAGAGCCTCTTGCAGAACCAAGGGACAGCAGGACCTAGGATAATGGGACCAGGGTATCTTGCTTCTGCTTTAAGGATGTTGTTGCTCTGAGCCCAGGTGTGGAGGAGAGGGTTCCCCGTGCCTTTGGGTCTACTCCTTTTCTGGAACCCATTGTTCTCACTCCCCCAGAGGGACTGTGCTTTCCTGGGGACTCTTCCTGTCAGCTCTGGCTTGGAGACTCTCCCTGCCTTATATCACAGTGTAAACCTACAAGTCCTGCTCATGTCAGTGCTTCAGTGAAGATGGTGTACCCGAGGCTAGCTCATTCACGTCTTCTTTCTATCTCATTGCTGTTCTTTCTGTGTCAACCTGAGGCGAAGCAGGAAAACTGAATTCCAGATGAAAATCCAGAAAGTCCCACTCTTAAGCTTTTCTGGAAAATGGTCCTTTCCTGAGAAGTTGAGGAGTTTCTGGTGTGCTTGTGGCATTCCCTCCATCATTCTTGGGGCCACCCTTGGTCATAGTGAGGCCTGTTCCAGCCTAACCATGAATGAGGAAATGTGAGCTTGCAAGCTCTGCAAGGCTTGTCCCTTCACCACCACACACCCTACAGGAAACATCTCTTGTACACTTGGCTAGAGCGCTGGGCTCTGGAACCTCGTGCTTCATAGGCACTTGGGTGAGGGTACCAGTAAGACCCCGAGATTAGGTGAAAAAATATCTCGAAAGGAAACAAAGTCCAATATGGTGGCCACTACATTTTCTTGTTTCTTGGAAGCTGTGGCTTCAGTCCAATAGTCTATTTCTTTGTCACTCAAAGAAGGTTTTCAGGGTCGTGTCTAGCCTGTCCCACCCTGCTCCACATCACTCTGCACCTCTGTAGGAGTCACCTTGTTAAGCTCTTGTGACATTCAAACTTGGTAAATGAGTTGATGGTTGGGAGTTTAGTTTTGTTAATTTTGTTCTTTTAGATATTAAAATGATCACAAGCGGTGTGCCTTACAAATTAAACATTCTCAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022949:ENSMUST00000023670:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(61.9=100)
A:
NA
C2:
PF134101=GST_C_2=PD(23.7=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types