RnoINT0037300 @ rn6
Intron Retention
Gene
ENSRNOG00000026870 | Clic6
Description
chloride intracellular channel 6 [Source:RGD Symbol;Acc:727938]
Coordinates
chr11:32689837-32698004:+
Coord C1 exon
chr11:32689837-32690018
Coord A exon
chr11:32690019-32697735
Coord C2 exon
chr11:32697736-32698004
Length
7717 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TGTTGCCTTTTGATTTTCAGATT
3' ss Score
10.92
Exon sequences
Seq C1 exon
TTTATGAAAAGAACCTACTACGGGCCCTGAAGAAGCTGGACAGTTACTTAAACAGCCCGCTGCCAGACGAAATAGATGCCTACAGTACGGAGGATGTCACTGTTTCCCAGAGGAAGTTTCTGGATGGGGATGAGCTCACACTGGCCGACTGTAACCTCTTACCCAAGCTTCACATCATTAAG
Seq A exon
GTCTGTTCCTGCTCTTGGCAGCTGGGCTGCATGCATGACGGGGTTTCCTTGTGGTTTTGTTTTGTTTTGTTTCGTTGTTGTTCTGACTTATGCTGGGGCCAGGCATGGAAACAGGCCTGGAACACAGATTTAAACTGAGGACTAGCAGTTTATAGTCAAGGCAGTGTGCTAAACACATGGAGCTACGAACTCTAGCCCTTCTCACGAAATACCTGCAAGTGTGCTCCCTGCCCCAAGTCCTCACAGATGTCCTCAGCCTGAGGAAAGCTCACATGCACTCAAGGTCTCCGTGGCGTTTTCCACATGTAGCTTGAAGATGATGTGTTGTTGATAATTCTAGGGATAAGAAAAATGTTGCAGGGACAATAGAGGGGTGTCCTATAAACTCTTAATATCAGCCCCCCCCACACACACACAGCTAAGAGCAGCTGATATATCTCCTTGCTTGGCCTTTTCTGTAGCTGGCACCGTTTCTTCCTAAGTAGTTGAATGTAGTAACAGGGTTAACGGTCACATACAACTGGAGCTGTTTGAGGGACCATTTTTCAAATTTTAAGATGTTTATTTCTCTTAGTCTCAGTTCTCTGATTGGTCACCTGACCTAGCCAATCAGAACGTGTCGTGGCTTCCATGAGGAATCCCGGGCAGCTGGTCCTACAGTTGGATGAGGTGCTTTTCTCTCTCTACCTCTTGGTGACTTATGGGTGTCAGTTGTTATTGTGACTGACAGCCAACTCTGCTATGTTTGTGACCTTCAGATGTCTAAAAAAAAAAGGGCTGGAGAGATAGATCAATGGCTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCAAATGGTGGTTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGAAGCCTGTGCACTGGGCACCTCCATTATTATTAGATTCTCGCTAGGCCTAGAGCTGGTATAGGATCATACAGTGATAATAAAGAGGAAACAGGTCTGTGCCATGCTCTAAGTTCAGACATATTTGGCTGGAAAAGTTACCCATCCTGGTTTCAGCTGTCCATGGTGGGCTGCCTATCGCTCTCCTTCACTCTGTGTGAGAACTTTGTCTTTCTCTTCCTGAACACCTCTTTGTGCCCTCCCCTCAGTCTCTGACTCACTCCTCCTCTCTTGCCTGTGTATGAGACCTACTTACAATGGACATCACCAATTCTTTGAGTGAATGTCTTTTCAGCAGCTTTGCAAAGGTCCCAACATCCAGAGTAACGAAAGCTGCTCAACCTCTGACAATCTGATGACTCTACAAGTCATTTTCCAGTGACATTCATGTCACTGGGTTGTGGTTTAGTCTCCCACAGGGATGGGTTTTCAGTCTTTGCTATGAATGGTATAGCACCAGACAGGTATGTGTAGGCTGAAGAAGAGACAGTGGTTACTATGACAAAACGCTTGAGAAAGTCTGTAAGAACAGAAAGGTTTGCTTGACCTGTGGTTTCAGAGCTATTAGTCCACGGTGAACTGGCTCTATTGGTGTTAGGCTCATGGCAAACACTGTGGCACGGGAAAGCAGCTCATCAGTGGAAGCCGGACGGTAGAGAGAGCAAGAAGTAGTGTCAGGAGACAAGATGTACCCTTCAAAGGCTTCCAGTAGCCTAAGGGCCACGTCCTATTGCCTAATCCGCTACAGTTAACCAGTCGATGAGGCTAGGTCCCTCATGGTTTAATCACTACCAGTTGGGACCAAACCTTCATTATATGAAAAGTGTTTAATATTCAAAGCACATTGGAGAACACAAGAAATATCACAACCACACAGCACCAGTCACAATGTGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTGTAGAGGATCGGAGTTTGGTTCCCAGCACCCATATTAGATAGCCTACAACCGCTTGTAACTCCAGCTCCAGGGGATCCACCTCTTCATCTGGCCTCTATGAGTACTTGCATTCACATGTACATACAGACATGCACATATATGTAAGCAGTGGACAGGGTGAGCTTTGGGGGTGGGGTAGGTCTAAAGCAGTCCATGGTGAGAATATAAGGCCTAGAAACAGAATCTTCAAAGCCATTTAGCACTTAAGATCCTAAACTGTTTAATGATCAGAGCACAGAGTACTTCTGAAGGAAATGAGAATTAGTCTAAGGGAATTATGGTAAAAGATGAGAGTGAGGAGATTTATAATTTAGTTCCTTTCCTGAAACCCACTGAAAATGACATTAAAAATAGAGCATTGGCTTCATCTTTCATGAGCCTACAAAAAAAAAAATGACAGATCACCCACAAACACAAAGAAATCCAAGAGACAGGATTGATTGGTGCATGGCTCCCTTTATGGTTAGAAGAGTTCAGAATTTTTAAGAAGTAAACAATGCCATCCTGAAATGCCTGAGATCTTTGGGTAGAGGGTAGGGCACGAGCTGGCAGTGAGGCAAAGGTTACAGAGAATATTTGTGGGTTGAGATTGCTAAAGAGACAGAGATGTTGTCTACACAGCCTGTGCCCAGCACCTCTCTTCTGCTGTGTCCTGCAGGGGCATGGGGTAGAGAAAGGAAGATTGTCATTGTGTTTTGTGGTGTGACAGAGTAAAGAAAAGAAAAGAGGAAAAAGGAAAGAAGGAATGATGAATGAAGGAAGGAATGAAGGAAGGAAGGAAGGGAGGAAGGAAGGAAGGAAGGAAGCAAGGGTTCTCTGACTCTAACTCTAATACCAACCCTATCTCTAATCCTAACTCAAGCTCTAGTGTGTCCCTGAGTAGAGGTCAGTGTTTCCTGAATGAATGGTCCATAATACTCAGTTCGCTCTACCAACTGACCTGTCCCCACTGTCCTGTTGCTCTATGTGATTTCTAAGCAAATGGTATCCCCAGTATGTCTGCCTCACTAAATCATGGCTAGCCACAAGAAGGAATCCATGAAGGACTGCCTAGCTATAGACAACGAAGAAAATGGTGGAGGATCCAAAAACTAAAGGGGGTAAAGGGGACAGGAAATGCATATGGGACAAAGACTTGTCCCAGGAAGCCAAGGAACATTCTAGATCCTTTTACAACCTTGAAAAGGGAAAATAATATGGACTTCTTCAGAAAAAGCTCTAAGACAAGATGTAGAATGTTGAAAAAACACAGTACAGAAAATGGACCAGGCAAGAAGTATTTGGGCAAGGAAAGTAAAGACAGTTAAAGTCCTGACGAAATAAAAAATATATGTAGAAGTAGCAAGAGGCAGACAAAAGGACACCACAGAAAGTAGCTAGACTGGACCTGAAAACAAATGACCTGAAACCAGGTGTTTATATTCAGAATGGGAGAAGAGGGAAGGATAGCAGGAAGGCAAAGGTCCAAGCAGAAGATTATATTAATTAAAGGAGAGCTGGGGCCTCTGCTTTATCTGAAGAATAGCCTGGGTCAACCACTTGTGCTAGGGTGAAACCCAGGGATTTATACATGCTGGGCAGCTAGCTACTCTACCACCAAGATTATCGCCAGCCCTTGGCATTTTGAGACAGAGTCTCACTATGTAGCTCAGTCTGGTCTTAGTCTCACGACTTACAGCATTTCAGTGTGAGTGTGTATGTGGGGAGGGAGGGGAGGTGATCATAGGTGAGACAGGAAGTGACCATAGGTGAGACAGGAAGTGACTGTAGGTGAGACAGGAAATAACCATAGGTGAGACAGGAAGTGAGCATGGATGAGACAGGAAGTGACCACAAGTGAAACAGAAAGTTACTACAGGTGAAATAGGAAATGATCATAAGTGAGACAGGAAGTGGTCATAGGTGAGAGGAAGTGAGCCTGAGTGAGACAGGAAGTAACCATAGGTAAAACAGGAAGTAGCCATTTGGTGAGACAGGAAGTGACCATATGGTGAAACTAGAAGCATACAGACTTGCTCTTGTCTATCAGTCTTTCCCACAGAATTAACCAAAGTCCCATGAGAACTATCTCACGCTATGTAGATGGCATGCTCTAATGATGCCCTCCTCCAAGCCCTGCCTCTTGAAGGTCCCTTCACACATTGCTCCACTGAGACCCAAACTTCCAAACAGTGACCCTTCAGGGAGTATGCCTAAATGATAGCAGACAGCCAGACAATAGTAGTCACCAACAGCAATGATGACACAGATAAACAGTAGAATTGCCTACAGGGGGAAGTTATCCACAATGACCTCAAGAACTTTCATGACATCAAAAATCAGCAAACAGGAAAAGGAAGGCTGTCTGGGGTATTATGAAAGAGTTTTATATTCCTAGTTATTATCTCCCCAGACACCCAGCCTCAGTAAAATAAGCACTCTTGAGTAGTAAAATTACTGTATGTTGAAATATTCAAATGATCATGAAAATAGGAGCCTTTGACAGATAAGATGTGCCTTAGAAAAGGCTGTTCAGAAACAGGGAACCTATCCTGTTCTAACTTAGAGCACAGATTTGCTCAAAGGACACCAGCTTGCTTATAGACTGCCAGAAGAGAGGCTTAGGGGCAACCTAACTATCCAGGCTGCCACTTACCTGTTTGGTTTCTCTGTTCTTATGTGTTTGGTGAACACATGTCTCAAGGGAGCAAAGTGATTATATTTTAATCAAAAAGTAAAATACATTTATAAAGAGAGATTGCAGCTGGAAATTCAATAAGAGGGGACAAGTCCTCTCCGTGAGCTTTTTAGCTTGGAGTTGAAGCCCTTTCGATGGAGAACCCATGCTGACACTAGTAGAGAGACCAAGCAGCAGCTCCAGCCACAGAGTCAAGTCGGAACGTGGTAAAGGAAAGGAACCAGCGAGATGTGGAGACACACAGTCCCTCCTTTGTCACTAACAGGAATCACCTTGATAGATAATATTAGGGGACCCTCAGAAAGAACTGAACCACAGCCTCTGGGCAACTGAAAGGGAGTGTGTGTGTGTGTGTGTGTGCGCGCGCATACACATAGGAAACAAAGTAGTAAACTCGGAAATCACAATGAGGGTGGGGAGATGGCTCAGCTGCTAATGAACTTGTCACACAAGCAAGAGGACCTGAGTTTGCTTCCCCAGAATGCTTGCAAAACATGGCAGATGTGAGGCATCCCATCTCAGGCAGGCAGAGGCAGGAGAATCCACCGGGTTGCTGGCCAGACAGTTAAGTCACATTTCAAGTTCCAGGCTCAACAACAGACCTTGTCTCAAAAATGGGATAGAGAAAGAGGGATTGGGGCGATGGCTCAGCAGTTGAGACTCGTGTGCTTGGCAGAGTAGCCACCTGCAACCGGCAGTAGGGACTGGAATGCCTCTTCTGGTCTCTAGGGACCTCTGCACACATGTGTGCACACACATAAGAAAAACATCTTTAAAACATTAAGTTAGGGCAATAGTTAAGAACACTGGCTGCTCTTCCGGAGGACCTGAATTCAGCACCCACATCAGGCAGCTTAGAGCTGCCTGTAACTCTGGGTCCATGGATCCACCCTAGACTCACATGCACAGACCACCTCCCCCCACCTCCACAGGACATAACTTAAAAAGTAAATCTAGCATAGCATTTAAAATATAGTTAGCAATCCAGAAAGTCACACAGTGTCCATCTGACTCCCACGCCTTGTCCACGCACTTGCACACCATCGTATGTAGGTTGACACACATGCACATGGAGATATATATACACAGAGAGAAATTCTAAAAGCAAGAGTCCATGTATGAGAGGGGGACATTTAGCAAATTTCTTCATTAATACTAAATATCCAGAGCTAATGGCACCGGCCCATAATACCTGCCACCAACGAGGCCGATGGAGGTAGACCGAAAGCTCAACCTCGAGTGGGTTACAGAGAGAGTTCAAGGCCCACCTGGGCAAGGTAATAAGACCCCATGCCCAAATAAAAAGTAAAGAGAGATCTGGGCTCTATGGGGAGACTCCAGGTTAAGATTTTTCAAAAAGATCAAAAGCGAAGCAGGTGGGTGAGAATCAACCAAAGAGACAAGAATTCTTGACTCGAGCATTCTTTTTTTTTTTTTTTTTTTTTTTTGGGTTCTTTTTTTCGGAGCTGGGAACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGAGCATTCTTAAATCTGTGTTCAGATGAAGAATGCTAGACCCTGTCACAGACTCTTTAGACCTTCCTTGGTCCTAATTTGCCTCCATGCTGCATGAATGGTGGTCGATGTCATCGTCTGGCGATTGAGTACTGAGATCTGATTTGTGCTGCATCTTAGCTTCCATTAATCCCAGCATCCCGGGATCAGTGGGGAGGGAAGGGACACAACAGATATGACCTTTGTAGCCCTGCATCCCTGTGGCAGATGGAAAGATGGAATCGTCCCCCCCCCCAAGCTTTTATATTGAAGTCTTAATCACTACTACCCCAGAATGGGTCTGTCAAGATACAATTTGTTAGGTTGGAGGTGCAGAAGAGAAGGTTGGACCCTCCTCTAATATGGCTTGCTGCTGAAAGAGGATTTAAGACAGGGACACCCAAACACAGCAAGAAGACATGCACAGACTCAGCTATCCTTCCATAGTCAAGAGCTTAAGACACGAGGAGAGAGGCTGGAGACAGATTTGAACCCAGAAGCTTTAGTGGGAGCAGGGACCCACTGACCTCTTGACTGCTGGGACTATGATAGAAAATCTTCTTGTTTTCAGTTGTTCAAGTGTGCAGCACTGATCGAGGCACACATCCCTCATCGCTGGACACCTTCCTTAGTGACCGATTCCCCACCTGGCCCTCTCCAAACCAAAAACCCGTCTCACATAGCCGAGTTCCTTAGTATATCCACCCCACTTGTCCGGTTTTTTGCTCCCACCGTCTCCATGATGGTGAGGAGCAAGCTGTTTTGTTTAAGCACTGACTTTTGCACACAGTAAAGCTCATGGTTAAACAATGTGCTTAGAAAAGAGTGGCGGACTTCCAAATACCAGGCATTAGGGAATTGCTGGAGGTGGCATTGAATAGCGAGAAGAGACAGCTGATTAAAAGTTCCTGATGGCATCCAAAACGAAGACCTCCCATGTGTCTTCATGCACCACGTAACACAGAAGCTGACACTTTGCCAAGGCATTGCCACAGACACAGGGGGACAGCCACTGGCATGCTGTACACACGTGTGGCTGGGTCCCAAGGATCACCTCTGGGAACCTGAGGGGAAGTTAAAAGAGGAAGGTTGATTTTGTCTCATAGTTTGATGGGATGAAAACCATGGTGGCTGGCGGGGGGCACGGTGGCTGGAATGCGAGGCACCTGGTCACAAGGTGTCAGGCACAGAGAGCTGTGGGTGCCGGTGTCCAGTTCCTTATGCTCTTTGTGTTCAGTCCAGGAACCCCAGTCCATGGAATCCAGTCTTCTACATTTCGGGTAGGTCTTTCAACCTCATTGAGCCCACCCTAGAGGCTCCCTCATTGTACTCGAAGCGTCATCTCCCAGGTGATCCTAGATCCTGTCAGAGACCACTGCATTTGGGTCCTGCACCTCTGTCACCCCTCCTGCTTCCAAGGTGCCCTAGCAAAGTCAAAGTGCCACCATGGGCAGCACCTTAGGATGACATTGGAAACTAAGCTATGAGCTTCCCAAGGTTGGGTTGTCTGACCTGGTCACCCTCGTGAGTGGACTGTCTCCTTTCATTGTTGCCTTTTGATTTTCAG
Seq C2 exon
ATTGTGGCCAAGAAATACAGAGGTTTTGAGTTTCCTTCTGAAATGACTGGCATTTGGAGGTACTTGAACAATGCTTATGCCCGGGATGAGTTCACTAACACGTGTCCAGCTGACCAGGAGATTGAACACGCGTATTCAGACGCAGCGAAAAGGATGAAGTAATGCTGGCTTGCGTCTTTCCTCAGATGAGTGAACAGGGCTTCCAGGAGGACCTTCTATGTTTCTTCCCCAAAACAGCTTTTGCAAAAAGAACGCTGACTCTCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026870:ENSRNOT00000034383:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(63.8=100)
A:
NA
C2:
PF134101=GST_C_2=PD(24.5=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]