GgaINT0112119 @ galGal4
Intron Retention
Gene
ENSGALG00000014720 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr1:77262351-77267779:-
Coord C1 exon
chr1:77267462-77267779
Coord A exon
chr1:77262666-77267461
Coord C2 exon
chr1:77262351-77262665
Length
4796 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTATATCCTCACTTTCAGAGT
3' ss Score
10.31
Exon sequences
Seq C1 exon
CAGACAGCCAGCAGATCAGGCTGGTGAATGGAACAAAACGCTGTGCTGGGAGAGTGGAGCTTTATCATGATGGCATCTGGGGCACTATCTGTGATGATAACTGGGATCTATCAGATGCAAATGTTGTTTGCAGACAGCTTGGATGTGGATATGCCATCAAGGCATTAAACTCTGCTCATTATGGAGTAGGCTCGGGGCAAATCTGGCTGGATGATGTGAACTGCACTGGGTCTGAATCCAATATCTGGGCATGTCCCTCTAGGGTATGGGGTCATCACAACTGCCAACACAAAGAAGACGCTGGAGTTCTATGCTCAG
Seq A exon
GTATGTTCAAAGAATACATTTCATAGCCTGTGAGTTGAAAGAGAACACAAATGGGGAAGCTGAGAATTGGCAGAGTCTTGCTTGGATGGCTTGTTATTCTCTCCTGTCTGCAAGCATGGCGCAGCATCACAAAGGGTGTACTGAAGTCCTTATTTTGCATTAACACATGTACATGCAAAAGTGTATGCTGAGGGATTTGGAGAATGAATTGGAGGGTTGCTATACCAAGAGGCTGTGGTTGCACAGCCTTGTGTGGAAGGAGGTCATCAACTGTCAAGTGCCAGATTGTTTACCAGTGGATAGGGTCAGCACAAAGGTCACAGACACCAAGTTAAAGAAGTGTGTTAATCTTTACTTAAATTTAAAGCAATGAGATAATAAGTGCAATGATATAGCAAGAATAAAGCAGAACAAGGCAATGCACCTAACTATTACTGCATGAGTAATCTCTTTGGATTCCACCACAAGCCTGGAGATGGCTCAAGGAGAAGCCAAGGAAGTCTGTGTACTGGTAGGCCTTGACACTATGCTTCTAAACAAGGAGAGGTTGATACACCCTAATAATACTTTATCCAAGCCACATCTGAGATGTTTTGCCCAAGATGTGTATTTTGCCAGTGGCTATACTTTTTGGTAATGATACATTTTGCTAATTACTGGATACTGACAATATATAACTCTGAGTTGTGAGATTCATCTAGAGGTCAACTTTGGTTCAAAGCCTATGTTCAGGCCTTAGTACTTCACAGATAGTCAGCAACAGCTGGCTCTGAAACTTATGGAAACAATCCACTGGACACCAAAACATCAACCAATCAGAGGAACACGTGGTGCTTCTTCTCATGCATACTTGAAAAAGAATGCCAGCAGCAAGAGAGAGGAGAAATAGAGTAGACATCTGGGGGACATTGCTGGAGACATGACTTAGAAGGTGACAGTCCTTGCCGGAGGAGATATGCTTCTTGAGAGGGCTGTGGCCTGTGAATAAACCACACTGGAACAGATAAACTTTTGAAAGGGTTGAAACCTGTGGAGGGCATGCAGTGGACCAGGTACAACGCCTGAAGTGACTGCAGCTTGTGAAGGAGTCATACTGGAGCAGAGAAAAATGAGTAAGTGCAGCACAAAAAAAGGCCAACTTTCTGCACTGCCATTCCTCTCAGTGAAGGGATTTGTAGGGGCAGCAGGGATGTGGTTGTTAACATTAGGTACCGTATAGCCATTCTCTTACTCCTCTAAGTCATCAGAACAGAGGGAGAAAATAAGATAAAAAGAAAGCTCATGGGTTGAGAAAAAATACAGGGAGATCACTCACCAATTACCATAGGGGGGAAAGACTCTCAACTTAAGAAAGATTAATTTAATTTATTGCCATTCTCCATGAACTGATCTTATGTGGGCATCCCACAGCCTGTGGAGGAGCTCATTGCAGTAGATGTGGCCTGAAGGTGGTCACAGCCCATGGAGAATCCCTGCAGGAGCATGCCCCGGGCTGGAGCTGCAGCCCATAGAGATGAGCCCATGCTGTAGCAGGTGGTCTGGGAGGAGCTGCAGCTCAGGGAACACGTGCTGGAGCACTCCATTCCAGAGAGATTCCATTTTGTGGTAAGAAACCATACTGAAGCAGTTCTTGAAGAACTGCTGCCTGTGGGATGCCTACACTGAATCCATTCATGAAGGATGGCATTCTGTGGGGGAAGGACTCCATGCTGGAGTAGGGAAAGAGAAGGAGAATGAAGGAGTAGAAACAACAACCTGTTATGGACTGACTGCAGCTCCCATTCCCCATTTTTCTGAGCTGTTTTGGGGGGAGAAGGTAAAAGAAGGTGGATGAAGGAGGGTGTTGTTAAATGGCAATTAGTCAAGACTAGGGAAGGGGATCCAAGGTGTTTCTCTATGTATTTGTTTAATTGTTAATGTTTTCTGCTTTTTTTTCCTTATTATTCTCCAAAGCAATTGTTAAAATTCTGTTAAGTGGCGATAAGTAATATTAAGTGGAGGCTGTTTTGCCCATAATAGCAGGTAGTATGTGCATGAGGCACTCCAGCAATAAAACAGCATGCCCTGGGACTGGACTAATTGCAGTAATTCTGAAGTTCCAGGGAAGTCTTGATTCTGGTATTGTAAATATGTCTTACTGTGTTGCGGTGTAAGTGTTGCACCCATACTGGGGGAAGGTACAAACTGTGTATAAACAGGTGGGAAAATAAGACTGTGACAGACCAGAGAAAGCTCTTATTGGATAGGAAAGATTTGAGAAGAACTCCACTGGCCTGGAGCCCATGTTCAAGAATGTCAGCTTGGGAGGTATAGATGAGCTACAGTGTAAAACCCAAGAGAATGGTGTGTTGCTCTGCTGTGAGGCACACCAGGGCCTACAATATGTTTACAACAGGGCTCTGAAGGGAACTGGGACAGCCTAACAGAGCTAGCAAGTTTGATTGATGGTGTCTGTGAGAGTAAAGGTTTGCTAAAAGTGGTTTTAACTAGTGCCCAGCAGGAAGGGGAGGATTCTGGTCAGAAGTTAGCAGCTGGTAGCACTGAAATGGACAAATTGCAAGGCTGCTTTTGGGAGCACACACAGCTTAGAAAGACTGAACTAGGCAGAAACTCTGATTCCTTAGAAGATTAAACAAGGGAAGTTAAGCAAGCTTCCTGCCACAGCAGGCAGCAAAAACATGCATGAGGGAGCCTGGACCATAGTCTCTGCTTGGAGCAGGAGGAATCTCTCCCTTATTCCTGAAGTCCCTCTACCCAACAGATATGAAGCACTGGGGATGTGTAAAGAGAAGAGGGTGTGGATAATAGTTCAGACCCAGAAAGGGACAACCACATTAATATGGTCCAACCAAGGACCCAAATCAGAGCCAATGCCACCAAAAAAAAGGTGAAAGGTCTTAGTAATTGGGGACTTCTCTATGAAGGTCACTGAGGCACCCATTTGCCTTCCAGATAATCCTTCTAGAGAGTTCTGCTGCCTGTGTGGGGCCTGCAGTCAACACATCAGGAAGGCACTATCAGGTCTAATAAAATTGGAGGACTACTATCTGCTCCTGCTCTTTCAAGCTGAGTCATAGGAGGCTGCAACTAGGAAATTACTTACAAAATATTAAAAAAGACTTTGTGTCCCTTGGGAAGATGTTAAAGGATCTATGATGTTGGATGTACCTTCAAGAGACTGGGCATGTTGACATCAGATGGGACACAACTCACTAGGAGGGGCAAAAATATACTGGGCAGCAAGCTGTCTGGGCTGATCACTAGAGCTTTAAACTAGATTTGATGGGAGAAGGGAATGTACTTCTGGGTGACAGAGAAAGACTGAGGAGAGCTGTCACTTTAGGAAACAGCTTTTGAAAACCTCAGATTTGTCCCAGAGGAATGTGGGAGGGTTCCTCCAAGAAGGGAATGCAGCTGATAGCCCAGCTGAAGTGACTCTACATTGATGCATGCAGCATGGGAAATAAGCAGGAGGAGATGGAAGCCACGGTCTGACTAGAAAGTTATCACCTAAATGCTATCACAGAAACATGGTGGGATTAATCACATGACAGGAATACTACAATAGAGGGCTGCAAGATTTTTAGAAGGAATAGGCAAGGCAAGGAGGGGCAGGGGAGTTCTCCTCTATATTAAGAAGTGGATAGATTGTGAAGAACTGTGAAACAGCCACAGTCAGGTTGAGAGCATTTGGGTTAAAACTAGGGACCACATCAATAAAGCACATTTGGTGATCAGGGTCTACTACAGGCTGTCTGATCACAGGGAGCCTGTGAATGAGATCTTCTTGCTCCACCTCACAGGCTCTCATCCTGATGGGGTTTTTCAACCATCTAGGCATCTGCTGGGAAAGAAACACAGCAGGCTGCAAACAATCCAGGAAAATCCTGGAGTCTGTTGAGGATAACTTCCTGGTTCACCACAGGTGAAGCGTTACTGTGGACCCGGTGCTCACCAATGCAGAGATCATTAAAGAAGTTAAGATTGGAGGTGATCTGGGCTGTATCAACCATGTCCTGAGGAGTATGGGCCTGGCAAACAGAAGAGACTCGGCTCTGAACTTAAGGAGAGCAAACTTGTGTCTGTTTAAGAAATTACTGAATGGGATTCCCTGGGAAGCTGTCTCTAGGGACACAGGAATTGAACAGTGGTGGTAGCTTATTAAGGATGCATTTCTGAAAGCAAAAGAGCTCTCCATTCCCCTACATAAGAAATCCAACAGAAGAAGCAGGAAACCAGCCTGGCTGAGCAAGGACCTGCTGGTCAAACTGAGGAAAAAGAAGGATGTGTACAGGCAGATGAGACAAGTACATATGGTGTGGGAAGAATGCAGTGGTGCCATCTAGGCATGCAGAGATGGGATCAGGAAAGCCGAAGCACAGGTGGAACTGAACTTGGTGAGGGATGTGAAAAATAACAAGAGATTCTACAGGCACATCGGTCAGAAAAGACAGGAAAAGGAGAGTGTGCCCCTCTGATAAATGGGAAGGTAGAACTGGCTTCAGCAGTCATGGAGGAAGCTGAGGTACTCAACAAACCTCAGTCTTCACTGCCAGTCAGCCTTCCCGCAACTCTCGTGTCCCTGACACTCTAGGCAGGGGCTGAGGGAGAAATATCCCTCTCATTTTATGATATCTGCACCTTCCTCACCTCCAGAAAAGTGTGTGACCAGCTGTCATAGGAGCCCCTATTGTTTGAAGAGTAATGCTTACTGAACTGTTGGTCTTTGGAAACAGGACAATGAAATGTGTGTTGAATCGTGCCCTCTGATTTCGTTTTTATATCCTCACTTTCAG
Seq C2 exon
AGTTCCTGTCTCTGAGGCTGGCGAATGGCAGTGGCTGTGCTGGACGGCTAGAAGTTTTCTACAATGGGACATGGGGGAGCATTTGCTCCAATCGTATGTCTCAACTCACTGCAGTAACTGTATGCAAACACTTGAACTGTGGAGACGGTGGGGAAATTGAAAGAGATTTCAAATATGGCAGAGGTTCTGGGCCCACGTGGCTGGATCACATTGAGTGCGCTGAGCAACACAGCTCTCTCTGGCAATGTCAGTCAGACCCCTGGGATCCTCAGTCATGTGATACCCGAGCAGAAGAGACCCATATTTCTTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]