GgaINT0112119 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:80924159-80930823:-
Coord C1 exon
chr1:80930509-80930823
Coord A exon
chr1:80924474-80930508
Coord C2 exon
chr1:80924159-80924473
Length
6035 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTATATCCTCACTTTCAGAGT
3' ss Score
10.31
Exon sequences
Seq C1 exon
ACAGCCAGCAGATCAGGCTGGTGAATGGAACAAAACGCTGTGCTGGGAGAGTGGAGCTTTATCATGATGGCATCTGGGGCACTATCTGTGATGATAACTGGGATCTATCAGATGCAAATGTTGTTTGCAGACAGCTTGGATGTGGATATGCCATCAAGGCATTAAACTCTGCTCATTATGGAGTAGGCTCGGGGCAAATCTGGCTGGATGATGTGAACTGCACTGGGTCTGAATCCAATATCTGGGCATGTCCCTCTAGGGTATGGGGTCATCACAACTGCCAACACAAAGAAGACGCTGGAGTTCTATGCTCAG
Seq A exon
GTATGTTCAAAGAATACATTTCATAGCCTGTGAGTTGAAAGAGAACACAAATGGGGAAGCTGAGAATTGGCAGAGTCTTGCTTGGATGGCTTGTTATTCTCTCCTGTCTGCAAGCATGGCGCAGCATCACAAAGGGTGTACTGAAGTCCTTATTTTGCATTAACACATGTACATGCAAAAGTGTATGCTGAGGGATTTGGAGAATGAATTGGAGGGTTGCTATACCAAGAGGCTGTGGTTGCACAGCCTTGTGTGGAAGGAGGTCATCAACTGTCAAGTGCCAGATTGTTTACCAGTGGATAGGGTCAGCACAAAGGTCACAGACACCAAGTTAAAGAAGTGTGTTAATCTTTACTTAAATTTAAAGCAATGAGATAATAAGTGCAATGATATAGCAAGAATAAAGCAGAACAAGGCAATGCACCTAACTATTACTGCATGAGTAATCTCTTTGGATTCCACCACAAGCCTGGAGATGGCTCAAGGAGAAGCCAAGGAAGTCTGTGTACTGGTAGGCCTTGACACTATGCTTCTAAACAAGGAGAGGTTGATACACCCTAATAATACTTTATCCAAGCCACATCTGAGATGTTTTGCCCAAGATGTGTATTTTGCCAGTGGCTATACTTTTTGGTAATGATACATTTTGCTAATTACTGGATACTGACAATATATAACTCTGAGTTGTGAGATTCATCTAGAGGTCAACTTTGGTTCAAAGCCTATGTTCAGGCCTTAGTACTTCACAGATAGTCAGCAACAGCTGGCTCTGAAACTTATGGAAACAATCCACTGGACACCAAAACATCAACCAATCAGAGGAACACGTGGTGCTTCTTCTCATGCATACTTGAAAAAGAATGCCAGCAGCAAGAGAGAGGAGAAATAGAGTAGACATCTGGGGGACATTGCTGGAGACATGACTTAGAAGGTGACAGTCCTTGCCGGAGGAGATATGCTTCTTGAGAGGGCTGTGGCCTGTGAATAAACCACACTGGAACAGATAAACTTTTGAAAGGGTTGAAACCTGTGGAGGGCATGCAGTGGACCAGGTACAACGCCTGAAGTGACTGCAGCTTGTGAAGGAGTCATACTGGAGCAGAGAAAAATGAGTAAGTGCAGCACAAAAAAAGGCCAACTTTCTGCACTGCCATTCCTCTCAGTGAAGGGATTTGTAGGGGCAGCAGGGATGTGGTTGTTAACATTAGGTACCGTATAGCCATTCTCTTACTCCTCTAAGTCATCAGAACAGAGGGAGAAAATAAGATAAAAAGAAAGCTCATGGGTTGAGAAAAAATACAGGGAGATCACTCACCAATTACCATAGGGGGGAAAGACTCTCAACTTAAGAAAGATTAATTTAATTTATTGCCATTCTCCATGAACTGATCTTATGTGGGCATCCCACAGCCTGTGGAGGAGCTCATTGCAGTAGATGTGGCCTGAAGGTGGTCACAGCCCATGGAGAATCCCTGCAGGAGCATGCCCCGGGCTGGAGCTGCAGCCCATAGAGATGAGCCCATGCTGTAGCAGGTGGTCTGGGAGGAGCTGCAGCTCAGGGAACACGTGCTGGAGCACTCCATTCCAGAGAGATTCCATTTTGTGGTAAGAAACCATACTGAAGCAGTTCTTGAAGAACTGCTGCCTGTGGGATGCCTACACTGAATCCATTCATGAAGGATGGCATTCTGTGGGGGAAGGACTCCATGCTGGAGTAGGGAAAGAGAAGGAGAATGAAGGAGTAGAAACAACAACCTGTTATGGACTGACTGCAGCTCCCATTCCCCATTTTTCTGAGCTGTTTTGGGGGGAGAAGGTAAAAGAAGGTGGATGAAGGAGGGTGTTGTTAAATGGCAATTAGTCAAGACTAGGGAAGGGGATCCCAAGGTGTTTCTCTATGTATTTGTTTAATTGTTAATGTTTCCTGCCTTTTTTTTCCTCTATTAATTCCCCAAAAGCAATTGTTTAAATTTCTGGTAAAGTGGGCGATAAGTAAATATTAAGTGGGAGGGCTGGTTTTTGCCCATAAATAAGCAGGGTAGTATGTGCCATGAGGGCACTCCCAGCCAATAAAAACAGGCATGCCCCTGGGGACTGGGACTAAATTGCAGTAATTCCTGAAAGTTTCCAGGGGAAGTCCTTTGAATTTCTGGGTAATCGAAAAATATGGTCCTTACCTGGTGTTGACGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACAGGTGGGAAAATAAGACTGTGACAGACCAGAGAAAGCTCTTATTGGATAGGAAAGATTTGAGAAGAACTCCACTGGCCTGGAGCCCATGTTCAAGAATGTCAGCTTGGGAGGTATAGATGAGCTACAGTGTAAAACCCAAGAGAATGGTGTGTTGCTCTGCTGTGAGGCACACCAGGGCCTACAATATGTTTACAACAGGGCTCTGAAGGGAACTGGGACAGCCTAACAGAGCTAGCAAGTTTGATTGATGGTGTCTGTGAGAGTAAAGGTTTGCTAAAAGTGGTTTTAACTAGTGCCCAGCAGGAAGGGGAGGATTCTGGTCAGAAGTTAGCAGCTGGTAGCACTGAAATGGACAAATTGCAAGGCTGCTTTTGGGAGCACACACAGCTTAGAAAGACTGAACTAGGCAGAAACTCTGATTCCTTAGAAGATTAAACAAGGGAAGTTAAGCAAGCTTCCTGCCACAGCAGGCAGCAAAAACATGCATGAGGGAGCCTGGACCATAGTCTCTGCTTGGAGCAGGAGGAATCTCTCCCTTATTCCTGAAGTCCCTCTACCCAACAGATATGAAGCACTGGGGATGTGTAAAGAGAAGAGGGTGTGGATAATAGTTCAGACCCAGAAAGGGACAACCACATTAATATGGTCCAACCAAGGACCCAAATCAGAGCCAATGCCACCAAAAAAAAGGTGAAAGGTCTTAGTAATTGGGGACTTCTCTATGAAGGTCACTGAGGCACCCATTTGCCTTCCAGATAATCCTTCTAGAGAGTTCTGCTGCCTGTGTGGGGCCTGCAGTCAACACATCAGGAAGGCACTATCAGGTCTAATAAAATTGGAGGACTACTATCTGCTCCTGCTCTTTCAAGCTGAGTCATAGGAGGCTGCAACTAGGAAATTACTTACAAAATATTAAAAAAGACTTTGTGTCCCTTGGGAAGATGTTAAAGGATCTATGATGTTGGATGTACCTTCAAGAGACTGGGCATGTTGACATCAGATGGGACACAACTCACTAGGAGGGGCAAAAATATACTGGGCAGCAAGCTGTCTGGGCTGATCACTAGAGCTTTAAACTAGATTTGATGGGAGAAGGGAATGTACTTCTGGGTGACAGAGAAAGACTGAGGAGAGCTGTCACTTTAGGAAACAGCTTTTGAAAACCTCAGATTTGTCCCAGAGGAATGTGGGAGGGTTCCTCCAAGAAGGGAATGCAGCTGATAGCCCAGCTGAAGTGACTCTACATTGATGCATGCAGCATGGGAAATAAGCAGGAGGAGATGGAAGCCACGGTCTGACTAGAAAGTTATCACCTAAATGCTATCACAGAAACATGGTGGGATTAATCACATGACAGGAATACTACAATAGAGGGCTGCAAGATTTTTAGAAGGAATAGGCAAGGCAAGGAGGGGCAGGGGAGTTCTCCTCTATATTAAGAAGTGGATAGATTGTGAAGAACTGTGAAACAGCCACAGTCAGGTTGAGAGCATTTGGGTTAAAACTAGGGACCACATCAATAAAGCACATTTGGTGATCAGGGTCTACTACAGGCTGTCTGATCACAGGGAGCCTGTGAATGAGATCTTCTTGCTCCACCTCACAGGCTCTCATCCTGATGGGGTTTTTCAACCATCTAGGCATCTGCTGGGAAAGAAACACAGCAGGCTGCAAACAATCCAGGAAAATCCTGGAGTCTGTTGAGGATAACTTCCTGGTTCACCACAGGTGAAGCGTTACTGTGGACCCGGTGCTCACCAATGCAGAGATCATTAAAGAAGTTAAGATTGGAGGTGATCTGGGCTGTATCAACCATGTCCTGAGGAGTATGGGCCTGGCAAACAGAAGAGACTCGGCTCTGAACTTAAGGAGAGCAAACTTGTGTCTGTTTAAGAAATTACTGAATGGGATTCCCTGGGAAGCTGTCTCTAGGGACACAGGAATTGAACAGTGGTGGTAGCTTATTAAGGATGCATTTCTGAAAGCAAAAGAGCTCTCCATTCCCCTACATAAGAAATCCAACAGAAGAAGCAGGAAACCAGCCTGGCTGAGCAAGGACCTGCTGGTCAAACTGAGGAAAAAGAAGGATGTGTACAGGCAGATGAGACAAGTACATATGGTGTGGGAAGAATGCAGTGGTGCCATCTAGGCATGCAGAGATGGGATCAGGAAAGCCGAAGCACAGGTGGAACTGAACTTGGTGAGGGATGTGAAAAATAACAAGAGATTCTACAGGCACATCGGTCAGAAAAGACAGGAAAAGGAGAGTGTGCCCCTCTGATAAATGGGAAGGTAGAACTGGCTTCAGCAGTCATGGAGGAAGCTGAGGTACTCAACAAACCTCAGTCTTCACTGCCAGTCAGCCTTCCCGCAACTCTCGTGTCCCTGACACTCTAGGCAGGGGCTGAGGGAGAAATATCCCTCTCATTTTATGATATCTGCACCTTCCTCACCTCCAGAAAAGTGTGTGACCAGCTGTCATAGGAGCCCCTATTGTTTGAAGAGTAATGCTTACTGAACTGTTGGTCTTTGGAAACAGGACAATGAAATGTGTGTTGAATCGTGCCCTCTGATTTCGTTTTTATATCCTCACTTTCAG
Seq C2 exon
AGTTCCTGTCTCTGAGGCTGGCGAATGGCAGTGGCTGTGCTGGACGGCTAGAAGTTTTCTACAATGGGACATGGGGGAGCATTTGCTCCAATCGTATGTCTCAACTCACTGCAGTAACTGTATGCAAACACTTGAACTGTGGAGACGGTGGGGAAATTGAAAGAGATTTCAAATATGGCAGAGGTTCTGGGCCCACGTGGCTGGATCACATTGAGTGCGCTGAGCAACACAGCTCTCTCTGGCAATGTCAGTCAGACCCCTGGGATCCTCAGTCATGTGATACCCGAGCAGAAGAGACCCATATTTCTTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]