DreINT0144198 @ danRer10
Intron Retention
Gene
ENSDARG00000096083 | si:dkey-21h14.8
Description
si:dkey-21h14.8 [Source:ZFIN;Acc:ZDB-GENE-110913-34]
Coordinates
chr4:11060326-11061144:-
Coord C1 exon
chr4:11060827-11061144
Coord A exon
chr4:11060632-11060826
Coord C2 exon
chr4:11060326-11060631
Length
195 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
3' ss Seq
TATCTTATGTTTCACTGTAGAGT
3' ss Score
8.63
Exon sequences
Seq C1 exon
GCTGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTTTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTTTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTATTCTCCAGGCTGGGGGAAACATGACTGTGGACACAAGGAGGATGTAGGAGTCATCTGCTCTG
Seq A exon
GTAAACAATAGTGTATATAGCTTTTGAAAAATTCAATTAACCTTAATTTGAACCATATATACTTCATATACAGCATATATAAGATCCAGTGTTTGAAATAAAAGTTTTGGTTGAGAGCAGAAATTAAAAATAAAATATGTATAATAAATAACAGATGGTTGGTTTAAAGTTAAATTATCTTATGTTTCACTGTAG
Seq C2 exon
AGTTTAAAGAGATCAGGTTAACTGAGGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGAAATAGACACAGTGAGTCTGATCTGTCAAGAGCTGAACTGTGGAAGATCTGGTGTTTTGTCTGATTCAACATCAAGGCTTAAATCAGCTCCTAACTGGTTGGATAAAGTAACATGTCGACCACATGATTCAAATCTGTGGCAGTGTCCATCTTTACCCTGGGGACAAAATATCTGCAATGATGAATATGAAGTGGCCAAAATCAGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096083:ENSDART00000150760:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGCCCATGTGGTGTGC
R:
CACATTCCCTTCACAGCCCTC
Band lengths:
255-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]