GgaINT0043106 @ galGal3
Intron Retention
Gene
ENSGALG00000009588 | DMBT1
Description
NA
Coordinates
chr6:32923208-32923823:+
Coord C1 exon
chr6:32923208-32923519
Coord A exon
chr6:32923520-32923723
Coord C2 exon
chr6:32923724-32923823
Length
204 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTCTCTGGTCGTTCTTACAGGGC
3' ss Score
10.99
Exon sequences
Seq C1 exon
AAGTAGCTCTGCGCCTGGAGAATGGTGGCAACCGATGTGAGGGCCGTGTAGAAATGTTTTACAGAGGACAGTGGGGAACAGTCTGTGATGATCGGTGGGACATCGAGGATGCTCGTGTTGTCTGCAGACAGCTGGGCTGTGGGCAGCCCATCTCAGCACCAGGAGATGCCCAGTTTGGGGAAGGCTCTGGGGTTATTTTCCTGGATGAGGTGCAGTGCAAAGGGAATGAAGCTTATGTATGGGAATGCTCCCACAGCGGTTGGTCAAGACACAACTGTGGCCACAATGAAGATGCCAGTGTTGTCTGTTCAG
Seq A exon
GTATGCTCCGCTTTGTTTTCTTCATTTCAAGAATCTCCCCTGATACAGATTTTGAAGTATAGCTGAAAATCGTTAGGAGTTGATTCCATGATGCAAAACCATTTCTTTCTCCACTGCTGTGGACTATTAAAGACCTAACAAATATAAATCTCATAGCTATTTACCAGCTCATCTGATCACTTTTCTCTCTGGTCGTTCTTACAG
Seq C2 exon
GGCCTGCAGCATAAGCAGAGGAAATAAAGATGTGCATTACCTTTAAGGCTGGTAAACTGCTGAGGCATTATCATAAATAAGCAATAAACGCTTTCACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGATGATCGGTGGGACA
R:
CCTCAGCAGTTTACCAGCCTT
Band lengths:
296-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]