GgaINT0043106 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30894593-30895640:+
Coord C1 exon
chr6:30894593-30894919
Coord A exon
chr6:30894920-30895610
Coord C2 exon
chr6:30895611-30895640
Length
691 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CGTCTCAGTCACTCATGCAGGAA
3' ss Score
4.35
Exon sequences
Seq C1 exon
CTCTGTCTTTGCTAGAAGTAGCTCTGCGCCTGGAGAATGGTGGCAACCGATGTGAGGGCCGTGTAGAAATGTTTTACAGAGGACAGTGGGGAACAGTCTGTGATGATCGGTGGGACATCGAGGATGCTCGTGTTGTCTGCAGACAGCTGGGCTGTGGGCAGCCCATCTCAGCACCAGGAGATGCCCAGTTTGGGGAAGGCTCTGGGGTTATTTTCCTGGATGAGGTGCAGTGCAAAGGGAATGAAGCTTATGTATGGGAATGCTCCCACAGCGGTTGGTCAAGACACAACTGTGGCCACAATGAAGATGCCAGTGTTGTCTGTTCAG
Seq A exon
GTATGCTCCGCTTTGTTTTCTTCATTTCAAGAATCTCCCCTGATACAGATTTTGAAGTATAGCTGAAAATCGTTAGGAGTTGATTCCATGATGCAAAACCATTTCTTTCTCCACTGCTGTGGACTATTAAAGACCTAACAAATATAAATCTCATAGCTATTTACCAGCTCATCTGATCACTTTTCTCTCTGGTCGTTCTTACAGGGCCTGCAGCATAAGCAGAGGAAATAAAGATGTGCATTACCTTTAAGGCTGGTAAACTGCTGAGGCATTATCATAAATAAGCAATAAACGCTTTCACTGCATGACATTGCTTACTGCTCATCCTTCTTTTCTCCATACCAAGACTCTAATTGCATTATTTGTCCAAAATGTCACAGTTAAACAGGATGTCTGCTTTTCCACACAGTGTTTGTGGAAAGGAAAGCCATCCCTTGCCAACCTCTCACCCAACACACCTCCTTGGGGTGTGTGGGGCAGGAGAAGGTGGCACTCCAAGATGTCCCACTGAAGCACACCTTGTTGATCCCTTAATAGGTCCTGTACCTACTTTGACTTTGTTAGTGTAGCTTCACGTGTGCAAGATTGCACTGTGGAAAAAAATAAAAAAGCCATCAGTTTACAAACAAAAACAATCTGTATACCTGCTTTATGTGTGATTTTTCCTTTCACGTCTCAGTCACTCATGCAG
Seq C2 exon
GAAGGAAAACATTCCTAGTTAATCAATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]