HsaINT0030801 @ hg38
Intron Retention
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7485096-7486813:-
Coord C1 exon
chr12:7486499-7486813
Coord A exon
chr12:7485417-7486498
Coord C2 exon
chr12:7485096-7485416
Length
1082 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AATTCTATGTTTCGCTGCAGAAT
3' ss Score
8.48
Exon sequences
Seq C1 exon
AGAGTGGTCAACTTCGCCTGGTAAATGGAGGAGGTCGCTGTGCTGGGAGAGTAGAGATCTATCATGAGGGCTCCTGGGGCACCATCTGTGATGACAGCTGGGACCTGAGTGATGCCCACGTGGTTTGCAGACAGCTGGGCTGTGGAGAGGCCATTAATGCCACTGGTTCTGCTCATTTTGGGGAAGGAACAGGGCCCATCTGGCTGGATGAGATGAAATGCAATGGAAAAGAATCCCGCATTTGGCAGTGCCATTCACACGGCTGGGGGCAGCAAAATTGCAGGCACAAGGAGGATGCGGGAGTTATCTGCTCAG
Seq A exon
GTAAATTATGCATATGACCTTTGGTCATAATTACATAGAGAAAGGACTGAGGAAGGGTAGTGAGGGGTATTAATCTTAAAGATTTTCCTGAAAAGTTGATCCAAAAGGAACTATTGTGGGAGTCAGGACAACAGAAGTCTGGGTTTGATGTGCTAGTGGTACTTCATGAGCAAGGTAGTGCAACATTGTAAAGAGAAAAGACCAGAAATGGTCTTGTATATCATGAAAATGACAACAAAGTTAATAATGAAGGTTTTTAATAAATATATTTGGGGCCAGATATTAGATAGCGATCCAATAGCAACACTTGATAATTACAGTATTAGTAAAGAAGTAGATTTAAAGGGACAAGAAGAAATATATATGTTGCATCATTCTACAGAAAAAAAGATAATTACTATGCCCAAGCAATTTTTCATGGCAGATAAATGAGACTTACTTGTCATAGAAACAAAAAGTAGCATGAGGTTACTGCCCTCATACTGCTTTGTATACATGGTGAGTTTTAGAAAACATTCTGAAATTTAAAAATGTACTATTTCATATGTATTATGGGGAACAGAACTATGATTCAGTAACTTAAGGAAGTGAAAAACTCTGTATCTCAGAAGTGATTTATTCCTATTTTAATGACATAAATCTGGTAGAAGACATGCACTGCAAAACTGTGAAGTGTCAGCAAATGAACTGTCATTTTAAGAGATGTACACAAAACATTGATTTTAGTGCCTGAGTGTCTAACAATTTTAACTATCAAAGACAGTTGCAAAAAAAGGAGAATATTTTTGGGAAAAAATCCAAACTATGTAACTGAAAAAAGCCTATTAGAATGATTGAGGGTAATCTAAAGAGGACTCTGAGTCCAAAACCAAAGACCAAAAAACTATAATGTATTTATAGAATAAATAAAATATTTTAATAATATCTATGAAATCATCCAGAAGTTACTAACGAATTATTAGTAACTGACATATTGTACTATTGTACCTATTTTTAAAGCCATTCTTACATCAAGGTAAAGGGAAGGAGTCTCTGAATCTTCAGAAAAGATGCAAAACTACTAATTCTATGTTTCGCTGCAG
Seq C2 exon
AATTCATGTCTCTGAGACTGACCAGTGAAGCCAGCAGAGAGGCCTGTGCAGGGCGTCTGGAAGTTTTTTACAATGGAGCTTGGGGCACTGTTGGCAAGAGTAGCATGTCTGAAACCACTGTGGGTGTGGTGTGCAGGCAGCTGGGCTGTGCAGACAAAGGGAAAATCAACCCTGCATCTTTAGACAAGGCCATGTCCATTCCCATGTGGGTGGACAATGTTCAGTGTCCAAAAGGACCTGACACGCTGTGGCAGTGCCCATCATCTCCATGGGAGAAGAGACTGGCCAGCCCCTCGGAGGAGACCTGGATCACATGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575:ENST00000359156:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCAGGCACAAGGAGGATG
R:
ATGTGATCCAGGTCTCCTCCG
Band lengths:
354-1436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development