GgaINT0112592 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75785629-75786522:-
Coord C1 exon
chr1:75786439-75786522
Coord A exon
chr1:75785806-75786438
Coord C2 exon
chr1:75785629-75785805
Length
633 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
3' ss Seq
TGGCATCTTTTCTTCACCAGGTG
3' ss Score
10.26
Exon sequences
Seq C1 exon
ATGATGTCATTTCTCAAGATGTTGCTATAGATCTACCTACAAATGTGGTAGAAGGATCACCCAGACCTTCCTTTTCTGTTGTTG
Seq A exon
GTAAACATAAAATTAATGAAACATTAAGAAAATAAAACTTTAAACTATGAAATGAAAGCTTTGTTGGGCTTCAAGATGTGACTTTTATTTCCTTCTGTGGGAAATATTGAGCAAAGAGACTGATTCTTATCTTGTCCAGCAATGTTCTTTCCTGCATCTAAAAATCAGTGACATCCTTATTCACATTTCTGTTCAAACTTATTGCATTTGAATGTTTTGCCTGGAAGTAGCACAGTTCTGAGTGTTCTACCAGACTCATGCCCGTAAGACTTTCTTCCACTCACTCGTGTACAAACCAGAGATGCTAATGGAAACTTCTTGGTCTTGTACTGGCCTTGGTTTCATTATTTTAATAGACAGCAAGTATCTGCATAAAGTGGCACCAAAATAGGTACTATGTATTTCTGGAATGGGCAATTAAATCTAAGTAAGAAAACGCAGGGCAGGAATGTATTTGTTAACTTGTCAAGCAGAACAGAACAAATTGCTGAGAAAGCACTGAGAACTTCAGGCTTCAGTACCACAGAGGCTTCTAACCCAGCCAGGTTTTCCATGACTCTCCCTACTGAATGAAAATAACTATTTCAGTGGCCATGAGTTGTGCTGATTCCCCTGGCATCTTTTCTTCACCAG
Seq C2 exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATGTGAAGTCCAAGACCATTGGATACTTAGTGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCATTTCTCAAGATGTTGCT
R:
CGCTCACTAAGTATCCAATGGTCT
Band lengths:
260-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]