HsaINT1028634 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9160314-9161116:-
Coord C1 exon
chr12:9161033-9161116
Coord A exon
chr12:9160491-9161032
Coord C2 exon
chr12:9160314-9160490
Length
542 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TAATCTTTCACATTCCCCAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTGCTAATGTGTCTGAGCAGTTGTCCTTGAAGCTCCCATCAAATGTGGTCAAAGAATCTGCCAGAGCTTCTTTCTCAGTTCTGG
Seq A exon
GTGAGTCACCTTCCATTTAGTAAACCTGGGCCAAAAGAGTTGCCACTGTACATCTTATCTACGTATTTGTATTTGAATTATCAAGTTCTTGATAGCTGCTATTCTTTTTTATTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTACAGTGACGTGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTCACCAGGATGGTCTCGATATCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGATAGCTGCTATTCTTATTAGGATTCTGGAAGTCACACTCTGTGTATATAACTTTTCTCTTACCTAAATGATAGACTCTGAATATAAAGGCCATTTTTGTTAATAATGTTGGCTATTTATGAACTGAAATTATTCTGACATCTAATCTTTCACATTCCCCAG
Seq C2 exon
GTGACATATTAGGTTCTGCTATGCAAAATATACAAAATCTCCTCCAGATGCCATATGGCTGTGGAGAACAGAACATGGTCCTATTTGCTCCTAACATCTATGTCTTGAACTATCTGAATGAAACCCAGCAGCTGACGCAGGAGATCAAGGCCAAGGCCGTTGGCTATCTCATCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTGAGCAGTTGTCCTTG
R:
CAGTGATGAGATAGCCAACGG
Band lengths:
254-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains