GgaINT0117848 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:75617417-75618264:+
Coord C1 exon
chr1:75617417-75617500
Coord A exon
chr1:75617501-75618087
Coord C2 exon
chr1:75618088-75618264
Length
587 bp
Sequences
Splice sites
5' ss Seq
TTGGTGATA
5' ss Score
-0.79
3' ss Seq
ACCTCCACCTCAAATTTTAGGGG
3' ss Score
8.49
Exon sequences
Seq C1 exon
ATAACACAGTCTCTGAAGAATTCTCCCTGACCCTGCCTGCAGAAACGCTGGAGGGATCTGGTCGAGCCACTTTCTCTGTGATTG
Seq A exon
GTGATAAAGGCTTTCCTTGCTCTTGGGTCCTAGTGGGAAAAGCTTGCACAATGCTTTGGCCTTAATGTGGCACTAACCCAGTTCCTCATAAGATAAACTGAAGAGTGTGATGATGGCCTTAGAAATGTATATCAAGTAATCTTTTTCAGCAGTTATTCCCCTCATATGAAGGATCTTAGGTGATCCTCAGGTGTCTGGAGAAGAAGGAGCAAAACAGGATATCTCCTCTTGATGTCTCTCAATCGTCCACCTAAAGCAACCAAAAACATCCCTCCAGATTATCATCTGGCTTGCCTCTATAATTCTTTTCCCTCCTTGATACCTCAGGAATGACAGTTCTTTTAACATTTCCTCAGATCCCCTCAAGTTTTGCATTCCCTGCCTCTTCCCAGAATGATACATTCTTCCTTTGCTGGTCTGGTCTTATCCAGGAGTGGCTGGAAGAAATCTAATTGTGATATTATATGCATCACTTTCGTGAGGAGCTCTTTTTCAGGATTCCAATAGAACTTAGAGAAGGCAGAAGTCCCTTCATTTTATATTGCTGAATACTTTTCTTTCTCCTGAACCTCCACCTCAAATTTTAG
Seq C2 exon
GGGATATCATGGGCCCAGCACTTCAAAATTTAGATCAGCTGCTTCAGATGCCTTTTGGCTGTGGTGAACAGAATATGGTTCAGTTTGCACCAAACATCTTCGTACTCCAGTACTTGAAGAAGACTAAACAATTGGATCCAGAAATTGAAGTTATAGCACTCTATTTCCTGAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTCTCTGAAGAATTCTCCC
R:
CAGTTCTCAGGAAATAGAGTGCT
Band lengths:
258-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]