GgaINT0112647 @ galGal4
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54949883-54950629:-
Coord C1 exon
chr1:54950504-54950629
Coord A exon
chr1:54949957-54950503
Coord C2 exon
chr1:54949883-54949956
Length
547 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CTTCTGTTTGTTTCATAAAGAAA
3' ss Score
4.16
Exon sequences
Seq C1 exon
CTATCGATGCCTGTGAGACCAGCAATGGCGGCTGTTCTGCCAACGCAGAGTGTAGAAAAACAACACCTGGAAACAGAGTGTGTGTCTGCAAAGCCGGGTACACCGGAGATGGAGTAGTCTGCTTGG
Seq A exon
GTAAGCATTCCCAGTGTCTCATGTATCACAATAGGAAATTACAGGAGTGAGCTTGCCTGTACATGGAAGAAGATCTGTCTTCTGCTATGATCCAGAAGTGCAATTCCTTGGCATTAGAGACCATGGTGACAAAGGCATCCCAACAGGCTTGTCTGCAGCACCACATGCTTGGTACCACTAGACAAATAGCCCAAGCATTAGCAGGTTAAAATCATAGAATGGTTTGTGTTGGAAAGGACCCTTAAGGGCCATCTAGTCCAACTCCCCTGCAATGAACAGCAACATCTACAGCTAGATCAGGGTGCTCAGAACCTCTTGAATGGTGAATATGCTCCTGTTCCTCTGACCATAGCAGTCTTAAATACTTGAAGAGACTGTTGTGCCATACCATCCTACAGGTATAGTTTTCAAAATGATGGCTTTTTTTTTTTTTTAGCATTTACCAAGGCAACTGCAAAACCCAGACTGAAATATCAATATATCTTTAGTATTCAACTAATTAAATGAGTTTCATTGATTCTTAACTGCTTCTGTTTGTTTCATAAAG
Seq C2 exon
AAATCAACCCTTGTCTGGAGAACAATGGTGGATGTGATAAAAATGCAGAATGCACTCAGACAGGACCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=86.0)
A:
NA
C2:
PF129472=EGF_3=PU(54.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCGATGCCTGTGAGACCA
R:
GATTGGGTCCTGTCTGAGTGC
Band lengths:
198-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]