MmuINT0153425 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86348373-86350642:-
Coord C1 exon
chr10:86350517-86350642
Coord A exon
chr10:86348447-86350516
Coord C2 exon
chr10:86348373-86348446
Length
2070 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
TGTTGACTTTTGTCTTAAAGAAA
3' ss Score
5.79
Exon sequences
Seq C1 exon
CCATCAATGCCTGTGAGATCAGCAATGGAGGGTGCTCTGCCAAGGCTGACTGTAAGAGAACCATCCCAGGAAGCCGGGTGTGTGTGTGCAAGGCAGGCTATACCGGCGACGGCATCGTGTGCCTCG
Seq A exon
GTAGGTAACCATCCCCTGTCTGCCTGGTGGAAATGGTGTCGGTCAGAGCCCTGGTCAAATGTTCTAGTGTGTGAGCTCTTGTTAGGACCATTGCTGGGATGGTAATTCAGTATGCCTTAGCAAGAAAGCCTGCAGGTGTGGCAATGAAAGATGTGCCCACAGAGGCGTGAAGGCATTTTGTTTTGTTTGTTTTGTTTTATTCCAAAGAGATAATATTTTAGATTTTTTTAATTAGATATTTTCCTTATTTACATTTCAAATGTTATCCCCCTTCCTGGTTTCCTCTCTGAAAGCCCCCATCCCCTCCCCACTCCCCCTACTCCCCAACCCACTCCTGCCTGCATCCTGGCCCTGGCATTCTCCTGCACTGGGGCATAGATCCTTCACAGGACCAAGGGTCTCTCTTCCCATTGATGACTGATTAGGCCATCCTCTGCTACATATGCAGCTGGAACCATGAGTCCCATTATGTGTACTCTTTGATTAATGGTTTAGTCCCTGGGAGCTCTGGGGGTTCTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAGACCCCCCCACGAAGGCATTTTGAATAGAAAGAGAGAACCTTTCCGCTTAATACTTCTAGAGGCAACTGAATGTTGTGCATCTTTGCTGTACACATTTCCTAAAGGCTAGTGGGGGGAGGGTAAGGAAAGGATAGCCTGGTCTACCAGGAGATGAATCTGAAAAGGGAAGAGGCATGACGTCCTCTCCCTTCTGGGGCTCCTTGCATGTTAGGGGGAAGGTCAGCCTTCCCTTCTCCCGTGGCAGCAGATAGGCTGTACTGGCCTAGACTTCTGGCCCAGCATAAGATTCTCTAGAGACAGGGACTCTCAAACTATTTTTACATTACTCTATTTTATTACATACCTATTTTTTAAGTATTTAAATTTTTGGTATTTTTAACGTAAAAAAGTATTGTATGACACATAGTGTTTAACACATACGTAGTGTTAAACACATAGTTTTTAATATGGTGTGACAGAATAATTCCTTGAAGATAGATATTAACACTGAAACATATTTGCTGACAGCATGCTTTAGAGATGTGCCCTAGGAAGCAGGCTAAATTTTAACTCACCAAAATGTGTTGCAACAGTTTGCTAATAAGAATCATGTGCTCTTGGCCTACACTCTCTTGTTAAGGGTCTAGTATTCACTTCTCCTTTGCTCTTTCTGTACAGCTTCATATTTTCCTTAATCATTTGAGACTAAGCTGTACAAATCATACTGAGTATGGATTTCCTAAGAATAAGGGCAGCTTGTTATGGAACCTCACTGGGTTCCTGACTTCAGTAAGTTGATATCTCTATAATACAATTTCTAATTCTATTCACAGTGCAATTCCATCAGGTGTCCCAACATTTCACTAGTACCCTAGGTCTTCGGAGGACTGGATGCTGTATTTAGTGTCTTAGCTCTGATCTGTGTCTTTGTTTCTGTTCTTTTATTTGGTGGTTGGGTTTTTAAATAAATTATTATTAGATCTCAGTTGCATATTCCAAACCAAAATGACACAAAAATGATGTCATATCCGTTGCAGAATGTCACAGTGTCAAGGTTTCCATCTAGCCCTTGTTTATGATATGCATTTTAACCAGTAGGTCCAAGTGCTGCCTGAGTTACCCTCCGTGTGGTCATGACCCCCCGGCTACCATTAGCAATCAATGGTGAGATGCTTTAACGCTTAGCAATCCACTTCTCGGAATGTTCTAAATTGATGAATCCTCTCCAAACCAATCTGTATGTGACGTCACAAATGATTGTGTCTTCATTCTCAAGCCAACTCACTCGTAGCAAGAGTGAACTGGAGGTCAGATAAGATGCTGTCTCTGCTAGAATTAGCCAGTGCAGTGGGGGACAGTTTTGAGTGACCATTCTTCCCCCACAGAGTTACTTCTGCCTCTGAACTTCCAGAACACTGAGTCTCACGTGACTCCTGCTGCTCCTTGGTCAGTTATCCAAGGGCAACTCCCTCAAAATGCCTTTTCACAGAAATAAAGCTTTCTGCTCATGACCCATGTTGACTTTTGTCTTAAAG
Seq C2 exon
AAATCAACCCGTGTTTGGAGAACCACGGCGGCTGTGACAGGCATGCAGAGTGCACGCAGACAGGGCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.5=4.7),PF129472=EGF_3=WD(100=86.0)
A:
NA
C2:
PF129472=EGF_3=PU(54.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: