HsaINT0160059 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103713643-103715888:+
Coord C1 exon
chr12:103713643-103713768
Coord A exon
chr12:103713769-103715814
Coord C2 exon
chr12:103715815-103715888
Length
2046 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
GTTGGCTTTTTGTTTTAAAGAAA
3' ss Score
5.92
Exon sequences
Seq C1 exon
CAATCAATGCCTGTGAGATCAGCAATGGAGGTTGCTCTGCCAAGGCTGACTGTAAGAGAACCACCCCAGGAAGGCGAGTGTGCACGTGCAAAGCAGGCTACACGGGTGATGGCATTGTGTGCCTGG
Seq A exon
GTAGGTGTCCTTCCCTCTTCCATCGGCGAAATGGTATAAGAGTCATAGCCCTATTAAATGATTCCAACGTGTGTGCCCTGATTATCAGGACACAAAACTGAGGTCAGTATTCCATTTGCCAGGGCAGGAAAGTATAAGGGCATGGAAAAGTGACCACAGGGTATGAAGGCATGTCATGTCCAAAAATTACTTCGGAAGGGTAAAAGGAGATACATTTTCCAATTAAACATCATGGCGATGACAGAACATTTAAACTTTTATTAGTTCCTTTTTATACAAGTAGCACATGCTCACTGTAGAAAAAGAAAGCACATGTACTGGAGAAAATACTCTGAAGATAGTGCTCTTATTATTGTCATTACCCCATTTTGCTATGCCTACATGTATTTTTTTTTAACAAAAATGGTATCTCAGGATATACAGCATTTACTATGCTTAGCAATATATCAAAGTAACTCTCCCTGAAAACAAGTATACCTCTAACATTATTTAAATATCCACACACTGTTCTACTATAAAGGTATGCCATAGTAAGTTGTCTGAATTTAACTGTTTAGTTAGAAAAAAATTGACATAGAAGAGTTATACAAATAGCACAAAAAAGACCCACTTGTTCTTTACCCACATTCACCTATTAACATTTAGCCCTGGCTGGGCGCAGTGGCTCACACCTCTAATCCCAGCACTTTGGGAGACCAAGGCAGGCAGATCATAAGGTCAGGAGTTCGAGACAAGCCTGGCCAACATGGTGAAACCACATCTCTACTAAAAATACAAAATTAGCCGGGTGTGGTGGCACACACAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGTACCCAGCAGGCAGAAGTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGCGATGGAGTGAGACTCCATTTCCAAAAAAAAAAAAAAACCATTTAGCCCTGTTTATCATTTGCTCTCTTTGTATATATACATTTTTAAGCCATTTGAGAGTAATCTGTGTATATTGTATTCCCTTTGTTCCTAAATACTTGAGTGTATATTTCCTAAGAATAAGGATAGCCTCTTACGTAACCACAGCACAGTTATCAACTTCAGTAAATTTATTATTGATGTAATACTTTTGTCTAATTACCATTCATATTCTAATTTTGTCAGTTGTTCAATAATGTCCTTTTTGACAATTTTTCCTCCAGTGAGGGATCAAGTCTAGGGCTGGATATTGTGTTTCATTGTCATGTATCTTGAGTCCCCTTTAATCTGGGAGAGTTCCTCAGCTTTGCTTTGTGTCTTATGACATTAACACATGGGAATAATATCCTCCACCTCGCCAACTTTTTTTTAGTAGCATGTCCTTTATTTGGGGTTTGCCTGATGTTTTTCATTCTTAGATTCAGGTTATACATTCAAGGCCCAAATGTCACACAAGTGATATTGCATCTGTCTCAGGGAACCTTGAGCTCTCCTTCTGCCCTCTGTGTGTGATGTTAATTTTGACCACTCAGTGAAGGTGCTGTGATGTTTCCATTATACAGTTATTTTTTTTTTCTACTTTACTACTGATAAGCAGTCAGAGGAGACACACTTTAACACCAAGCAGATATGTTGTTCCCCCTCAAAATATGCTCCTTAGTTTAGCATCTTTTGATGATTCTTCCCTGAACCAATCTATATTGTGATGGTTGCAAATGATTGTTTTTAATTCCTAAGTCTCTTCATTCATAGCAGTCTTAGATTAGACTCCAAGATTCTATGGTTTCAAGTACTTTGCTACAAATGCTCAAATTTATTCCACGGACTGATTTAAGCCAGTAGACAATCCCTCTGCTGGAACTGGCCTATCCCAGAATAGTCAATCTTAAGAAACCATATACAGTACCCTCCTAGTTCAGTTATTTCTGTCTCAGAACTTCCAGAAAACTGAATCATGCTTTGACACCCGCTCCCTTCAGTCAGTTAGCCATCTTAGCTCATCCCTCAAGCTGGCTTCACTTGGAAACCAGACTGGATTTCCAGGCCAGATGTTGGCTTTTTGTTTTAAAG
Seq C2 exon
AAATCAACCCGTGTTTGGAGAACCATGGTGGCTGTGACAAGAATGCGGAGTGCACACAGACAGGACCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=86.0)
A:
NA
C2:
PF129472=EGF_3=PU(54.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains