GgaINT0112666 @ galGal4
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54933329-54934488:-
Coord C1 exon
chr1:54934355-54934488
Coord A exon
chr1:54933495-54934354
Coord C2 exon
chr1:54933329-54933494
Length
860 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TCTCCCTCATGGCCTTGCAGGCA
3' ss Score
9.46
Exon sequences
Seq C1 exon
ACACAACAGTTGGAGTTTTCCATTTACGGTCCCCAAAGGGGCAGTACAAAATGACTTATGAGAAGGCAAAGGAGGCCTGTGCCAATGAGTCAGCCACCGTCGCCACATACAACCAGCTGCTGTATGCACAGAAG
Seq A exon
GTGATGTAGGCTCGCTGCAGGAGGAGTCCCTCATGTGGATATAGCCACGGTGTAAATGGAGAGGGAGGAGCAAGGGGGTTGCTCAATGCCAATAAGTTTTGTGTTCTCACCTTTCTTCCCCTCGGCCACCCCAGGATATGTTTGGCTGGTAGCAGTTTTTAGACTGATTATGGGGCTCATGCCTGCTCATACAGCTCTGAAAACAATTCAGTTGCCAAATTCTTGTTTCCAGTTTTCCAGAGAATAAAGTCAGACTTGCAGAGTGTTTTCATGAGAGTTGTCATTGTTAGGTCTTCTATAAGAAATGTACAGGTTAGATCTATGTTTGGATTTTATTATTTTTATTAATATAATGCTCTAGGATTACTGTTAAATTAGCAGAGCCATTTCCATGCTCTTTTCCTTGAGTGTGCTGTAGACAACACGTGGTTGATGTCAGTGGGATGAGCATCATCACACCTCGGGTTTGTACTTCTTTTCAGTAGGGTGAGCCAGACTGTGCCATTCTGGCTCTTTCCCGTCTGCAGAAGGAAGGAAGAAGGGAAGGAGGGAAGGAGGGAAGGAAGGAGGGAAGGAGGGAAGGAAGGAGGGAAGGAGGGAAGGAAGGAAGGAAGGAAGATGCTCATGGTTGAGAGACATTTTTCTCAAAATATGAGGCTGGACCACAGCCAGACTCCTTCTGCAGGAACAGAAGGGCTGGAAGGGCAGGGAGCAGCAAAAACAGGGCAGGCTGCAAAGGCAGGGAGTTCACTCAGATTCCCAAAAGTGGGCTGGGGGGTGTCAGATGCTGTCCCTGTCCATCGGCAGCTCTGGCCCCACAACCCAGCTCTTCCCATGTTCTCTCCCTCATGGCCTTGCAG
Seq C2 exon
GCACGGTACCACCTGTGTGCAGCCGGCTGGCTGGATGGCCAAAGGGTGGGCTACCCTACTGCCTTCTCATCACCAAACTGCGGCGCTGGGTACGTCGGCATCGTGGACTATGGGAGAAGGGTCAACCTGAGTGAAACATGGGATGTCTTCTGCTACAGGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PU(43.6=91.1)
A:
NA
C2:
PF0019312=Xlink=PD(54.3=91.1),PF129472=EGF_3=PU(22.7=8.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTTTCCATTTACGGTCCCC
R:
TTTCCCTGTAGCAGAAGACATCC
Band lengths:
286-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]