HsaINT0160080 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103753220-103755467:+
Coord C1 exon
chr12:103753220-103753353
Coord A exon
chr12:103753354-103755301
Coord C2 exon
chr12:103755302-103755467
Length
1948 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCCTGTCTGTATCCCTGCAGGCC
3' ss Score
11.78
Exon sequences
Seq C1 exon
ATACCACTGTTGGGGTGTTCCATCTACGCTCCCCACTGGGCCAGTATAAGCTGACCTTTGACAAAGCCAGAGAGGCCTGTGCCAACGAAGCTGCGACCATGGCAACCTACAACCAGCTCTCCTATGCCCAGAAG
Seq A exon
GTGGGTCTTCAGTTAGCAGATTCTGTGCAGACAGAGTCTGCAGGGGCGGAAGTGCAGCCCTTTCTTAAGATGGGGAAGACTTGAGCTGTTGCCTTCAAGCAAGGGAGTGCAGGTAGCTCCTGGAACAATGCTAACAGTCACCATGTCCATTTATTGGGCATCTATTATGTGTCAGGGACTGTGCAGGGTACTTCGTGGATATTATTGTTCATCCTTACAACATCTCTGAAGGCAGAGCAGGTGTTACTTACTATTCCCATTTTACAGATAGGGAAACTGAGGCTTAGAAAGTTTAAGTACAGTGCCTGATGTCACCCAGCCAAGAGGTGGCAGATCCAATATTTAAGGGTAGACCTGACTCTTAAAAGTCTATTTCAACCATGACATTCAACTGCCAAGGCAGAAGTGGAGACTGGAAGTGCATCCCTCACAGCTGGAAACCAGAAAGACAGCAATACCCACGAGCCTAGGGTGGATCTCCCCGAACCCACAAAACAGTGGAGTTTCCCTGGAATAGCTGGGGCTCTCTCTGGCTGGAGGGACTGTGAAAAGAAAAAAGAGACTGCACAAGCTTTCAGATATGGCAGGAAGGAAACGGAGCTCTTTGATCAGGTGCTGCTCTCTTAACCTCTAAAACTAGAAGTCCTACCCATTTGGAAAAGCTAGCAGGTTGGAGTTCCAGGCTGGTGGTTTATCACTGGGAGCAGAGGAGATGAATGCCTAGTACGTATGATTTTAAAGCCCCTTCTCCAACCTCCATCACTAACAAATCTCTACTTTTTCAGACCTGGTATTCCTTTACCAAGGAATAAAGCCTTTGATGCCAGGACCCAGACTCAAGGAGAATCTGAATCTCTGCTCTCCTGCTTGCTGGTCATGTGGCCTTGATATCAAGCCACTAAAATCTCTGACTTACCTGGAATGTTTGTGGAAGGACTAAATGTAATATGGCACACAGTAGGAACTCAATTTTTAAGATTATTAAAAGATCTGGAATAGTAGACCACCTGGGTTTGAATGCCAGTTGCCAGCTGTGTGACTTTGAGCAAGTTACTTCTCTTTGCCTCAATTTTCTCAATTGTATAAGGATTTAAAACGTTCCCACCTCATAGGGTTGATTGAGAGTTAAAGGTGTTGACACATGAAAAACTCTTGCAAGAGAACCTGACCCCAGATAAGCTCCCAATAAGTCTTATGATGATGATGGTGGTTGTGGTGATTATGATAATGGTGGTGGTGATGATGGGGAGGATGACAATAATTATAATAACGATGAGAGCAATGATGATATTATGATGAAGAATTAGAGTTCTAGGCCAGGCGTGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGCCAGAGGCGGGTGGATCACTTGAGGTCAGGAGTTTAAGACCAGCCTGATCATGGAGAAACCCAATCTCTACTAAAATACAAAAATTAGCTGCACATGGTGGTGCACACCTGTAATCCTAGCTACCCAGGAGGTTGAGACAGGAGAATTGCTTAAACTTGGGAAATGGAGGTTGCAATGAGCCAAGATCATGCCACTGCCCTTTAGCCTGGGTGACAGAGCAAGACTCCACCTCAAAAAAAAAAAAAAAATTTGAGTTCTATCATCAGAGTTCTACCAACCCATTAGCAGAAAAATTTGCACCTAGTATCAATGGATGACAGCAAATTCTTTCTCAAGAGCAGAGAGAAGAGAAATGAGTATGAAAGACCTGGGCACCTACAAGAAAGAGAGGACACTTTTGTTCACCCAGTGGCTCAATCAATCAGTCAACATCTAATGACCACCTACTGTGTGCCAGGCACAGAGGTGCAATAGGCAAAGTGAGACTTTATGGGTTTTATGGCCTAATAGGGGAATCAGACATTAACCAAGTGATGCCACAACACATGAACTTGCAGCTGACCCATGGCCCTGTCTGTATCCCTGCAG
Seq C2 exon
GCCAAGTACCACCTGTGCTCAGCAGGCTGGCTGGAGACCGGGCGGGTTGCCTACCCCACAGCCTTCGCCTCCCAGAACTGTGGCTCTGGTGTGGTTGGGATAGTGGACTATGGACCTAGACCCAACAAGAGTGAAATGTGGGATGTCTTCTGCTATCGGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PU(43.6=91.1)
A:
NA
C2:
PF0019312=Xlink=PD(54.3=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTTGGGGTGTTCCATC
R:
TCATCCGATAGCAGAAGACATCC
Band lengths:
294-2242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains