RnoINT0144391 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27378255-27380835:-
Coord C1 exon
chr7:27380776-27380835
Coord A exon
chr7:27378421-27380775
Coord C2 exon
chr7:27378255-27378420
Length
2355 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCACCTCCCTGTCTCTGCAGGCC
3' ss Score
12.52
Exon sequences
Seq C1 exon
AGCTGTGCCAAAGAAGCTGCGACCATAGCCACCTACAACCAGCTCTCCTATGCCCAGAAG
Seq A exon
GTGGGTTCCCGGTTAAGCAGGTGCCTCAGGCAGAGCAAACAGGGAGGTGTGCAGGCAGGCGCCTCTCAAACTGGAGGAAATCCCCATGACCTGCTTCTTAGAACCAAGCACAAGAAACTCCTGAGGCAGTGCCAAGAGTTCATCACACAGAAGTCAGGCACCTGCCGTGCGTCCAGCACTGTGCAGGGGGTCGTGTTGGTGTCCTTACTACATCCCTGGTGGTAGATGTCACCCCTTCAGTTTTACACATAGGCAAACTGGGGCTCAGAAAGGTTAAATGAAAAATCCAATGTCACCCAGAGGTGGTACAGCAGAGTGAAGTGCAAATGTCACAGGGGAATGACAGGAAGGCTAGCAACCACAGCCTCGGCAGGCTCTCTCTGAAGTCACAAATCAGTCAGCGCTAGGGCATGGGTAGTGGAAGTCCTGGGCCAGCAGGGAGGAGTGGCTCTCAAAGCCTCTGGAACCAGAAGCCCCGCCCATTTGGAAAAACCAGCACCAAGAAGCCGCATGCTGGTCCCTCCCTAGGAACAGAGGGTCTGGTGTTGAATCCGTTCACAGTGATTAAAGCCACTGAAACCTGTGGTCCTGGTGCGTGTGTCCCGGTCCTAGTGTGTGGTAGTGTGGCATGCTGAAGGGGCTCAACATCCTGTTACTGAGGGATCTGGGACACACTGGGTGTGACTGAGTCTTCTGGGTGCCTGCCTGGTGACTTTGTGCAGCTTGCTTTGTCCTGCCTCAGTCATCTTTTCTTAAACAACTTCTTGAGAATTTCAGACATAAGCATCGTATTTACATTGTTTCTGCCCTTCCTCCCTGCCACCAACTCTTCCCAAGGCACCAAAACTTCCTCTCAAACTCACAACCTCTTCCTTAATTATTGTTTTGCACGCGCGCGCGCGCACACACACACACACACACACACACACACGCATGAGCACGCATGCGCACACGCAATGCTGAGTCCATTTAATGGTGCTCGTATGAGTATTACATGAGCTTATATGAGCTGACCACACGGGTGTGGGAACCTTCTCAGGGAACTCAGACCTGGAGAAAACTGATTCTCCCTCTCTTAGCAGCCATTAAGGGCCTGTAGCTCTTCGTCTAGGATGGGGGGGCCTTGTGAGATGTCTCTCACTCACGTTGTCTGTCGTGTAGATTTTCTTTAGGCAACCATATTGTTGCGAGGTCACGGACGCAGGTTCCCTGTCACATACAGAGACACCTTTCTCTCAGCAGATGTCCTGGTCCCCTGGCTCTTAGAGTCTTTCTGCCCCCTCTTCCGCTAAGCCTTAGGTATACAAGTTGGGCTGTAGAAGTATCAGCTGATGCCAGGCATCTCACAGTCACTTGTTTGCAGTTTTTGATCGGTTATCAATCTCTGTAATAATCTCCATATGCTGTAAAAAGAAGTTTCTTTAATGAGGGGGAGCTATACTTGCCTATATATATAATAAATATTTAGAATACGGTTAGAAATTATACTAGTGTAAGGCAGTGGCTATGTATAGTGGGTTCTCCTCGAGTGTCCCTGGCTTCAGCAGCCACAAGCGAATTTCCTGCAATTGAGCAGGCCCTACGTCCAATTAGACAGCACTTGGTTCCCTCCAAGGTACAAGCACGGCCACCGCACCTTTGGAAATACCTTGCCGTGCTAGTTTTTGCGGTTTACAAGCTCTTTGTCTGGGTAGGACCTCTGATTGTTTGTCTCCGTTGGCATGCTTCCCGTGCTAGAAGAGCTGGTTCTCAGGAAGGAGGTCTCCAAGTCAGTTCCAGCTTGATTCTTCCAAGGCTTATGTCCAAATCAGTGTCTTCAACAGTAGGTCTTACCTGCAGGTTCTGGGAGACAAGCAGGAGTAATGACAAAAGCCCATGTTGTTTGGGGGTCTCCTGGACCCCACTGATGCACAGTGGGATCCCAGACCTGGCACTCAGTTGTAGATGGTTGTGGTTCCTGGGGCAAACATTATCACCTTGTATCTCAGCCACTTAAATGATCTCATAGGGATTTTAAAATTACAGCCACAAGGGCGAAGGGGATGGTGATAATGACGAATTAGAATTCTGTCATCAGTCAGGGTTTTGCTTCATTCGTAAGCAGAAGCATTTGCCCTGGGGTAAATGGCTGGTGGCAAATCTCTTCTCAAAAGAGAAGGAAGCCTAAAAGCCCTGGGCAAGAGCAAGAGGGTACCACGGTCATTCATCCAATGGCTCGATGGACAGAAATTTATCTTCCAGGTACTAGTGTAGGCCCCACGGAGTTTGCAGTCCGGGTAGGGATCAGAACTAACCAAATGAGTCTACAGCAAACAAGACATTCTACACAGCCCAGTCACCTCCCTGTCTCTGCAG
Seq C2 exon
GCCAAGTATCACCTGTGCTCGGCCGGCTGGCTGGAGAGTGGGCGGGTTGCCTACCCCACGACCTATGCCTCTCAGAAGTGTGGTGCAAACGTTGTTGGGATCGTAGACTACGGATCCAGGGCCAACAAGAGTGAAATGTGGGATGTCTTCTGTTACCGGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:70
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=FE(20.7=100)
A:
NA
C2:
PF0019312=Xlink=PD(55.4=91.1),PF129472=EGF_3=PU(41.4=21.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]