HsaEX1033062 @ hg38
Exon Skipping
Gene
ENSG00000257681 | RP11-341G23.4
Description
NA
Coordinates
chr12:103746315-103766913:-
Coord C1 exon
chr12:103766735-103766913
Coord A exon
chr12:103763423-103763818
Coord C2 exon
chr12:103746315-103746639
Length
396 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTCTGTTTGTTCAAGGAT
3' ss Score
9.2
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCATCCTCGTGGGTGTGAAGTGACATCTCATTATGATTATCATGTCTTCTTAAAGAAGCAAACACAACCAAATTCAGAAGAATTTATAAGGCTGGTGTCTGATTGATTGAAAAGGCCCCAGGAAGTGGATTTTGCCTTCAGAGTTCAACTCCTCCTCTGGTGCAGTCCCAAAACACTAG
Seq A exon
GATTCTGCTGTCTACCCAAGAGAACCCAGGAACTCTGAGCAACCACACTGGCTTCAGTCAGCTTGCAAAACTGGCTTTTAGGCTTGTTACCTGACATACATTCTAGAAATGAACCTTCTTTGGTACAAAGATCTCCACTGAAATTTCCTAAAAGACATCATTCCCCTGTACCCCAAGGGAACCTATTCCTAGATAAGAATGCAAACTCACCGTGAAGGGGTCGTAGGAAGGTTCTGGGGGAGCTGAGGTTGTGCTCTCATACAAGGGGTTCGAGATATTCTCAGGCTGCTGCTTGCCAAGAGCTGCAACATTAATGTCCTCTTCCGACTGTTTGGAAAGACAAGCATGAAAGCCAGGAGCATCCCCAAAGCAGGAGCGTCTCAGCCAAGTTGGCAG
Seq C2 exon
GTGGCATGAGCAGAACAAGGAGGCGTACACACTGCAGGCAAAACTGCAAAGAAAGGGGCCACTTTCATTCTGTACCCATGGTGTGAAGAGTTAAAACCCATCTAAGGAGACTTTCCAAGACTCTCTCTGGACGACCACTGTGTTCATAAGTGCCCCTGTACAGCAGGAAGATGGGGTGATTTGCTAAGGTCTTTTCTAGCCTTGGAGATTCTGGGATTCTAGAATTACTCTTTTATAGTAAGACATGATCTCTGCAATGTCATTGAGATTTATATGAGAAAAAATGTTCTTTAGGGGCTATCAATTAAAACTTTATACCACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000257681_MULTIEX1-1/3=C1-C2
Average complexity
ME(1-2[93=100])
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCGTGGGTGTGAAGTG
R:
ACCCCATCTTCCTGCTGTACA
Band lengths:
355-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains