HsaEX1033063 @ hg38
Exon Skipping
Gene
ENSG00000257681 | RP11-341G23.4
Description
NA
Coordinates
chr12:103746315-103766913:-
Coord C1 exon
chr12:103766735-103766913
Coord A exon
chr12:103748867-103749044
Coord C2 exon
chr12:103746315-103746639
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTTTGTATCCCTTCTGGCAGCTG
3' ss Score
8.48
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCATCCTCGTGGGTGTGAAGTGACATCTCATTATGATTATCATGTCTTCTTAAAGAAGCAAACACAACCAAATTCAGAAGAATTTATAAGGCTGGTGTCTGATTGATTGAAAAGGCCCCAGGAAGTGGATTTTGCCTTCAGAGTTCAACTCCTCCTCTGGTGCAGTCCCAAAACACTAG
Seq A exon
CTGCAGGAGACCTTCGTGCCCTTCTGGGAGCATCTGGCCACCTTTGCACAGCCCCCGTTGTCCTGTTTGCAGAAATCCACAACTGCAAGAGCAGAGGAGAGAGGGCTCAACTTACCACCTTCTGTGGAACTAGGGCTTCAGGTCAGGGTATGGGGCACCACAGCACTAGTGGTGTTGG
Seq C2 exon
GTGGCATGAGCAGAACAAGGAGGCGTACACACTGCAGGCAAAACTGCAAAGAAAGGGGCCACTTTCATTCTGTACCCATGGTGTGAAGAGTTAAAACCCATCTAAGGAGACTTTCCAAGACTCTCTCTGGACGACCACTGTGTTCATAAGTGCCCCTGTACAGCAGGAAGATGGGGTGATTTGCTAAGGTCTTTTCTAGCCTTGGAGATTCTGGGATTCTAGAATTACTCTTTTATAGTAAGACATGATCTCTGCAATGTCATTGAGATTTATATGAGAAAAAATGTTCTTTAGGGGCTATCAATTAAAACTTTATACCACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000257681_MULTIEX1-2/3=C1-C2
Average complexity
ME(1-2[93=100])
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCGTGGGTGTGAAGTG
R:
AAAGTGGCCCCTTTCTTTGCA
Band lengths:
243-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains