GgaINT0115146 @ galGal3
Intron Retention
Gene
ENSGALG00000012438 | SBF1
Description
NA
Coordinates
chr1:458752-459819:+
Coord C1 exon
chr1:458752-458841
Coord A exon
chr1:458842-459717
Coord C2 exon
chr1:459718-459819
Length
876 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CCTGGTTCTCTTGTTGGCAGATC
3' ss Score
8.38
Exon sequences
Seq C1 exon
CTGATGAAGGCCTGCGTGCCCGGCTGCCCCTCCACCGACCCCAGCGTGGCCTACCTGCGCTCCCTGGAGGAGTCCGAGTGGCTCTCACAG
Seq A exon
GTCAGTGGCTCCCGGGGGCCGTGGAGATCCCAATCCATGCCTGGGGTCAGGGGCTGCAGTTGGCTGTTGAAGGGCTGTGGGCTTTCGGACTTCCTTCCAACCCAACCATTCTGTGGTTCTGTGATCCTATATGGATCCTTCCAACCCAACCATTCTATGGGTCTTTGGCCTTTGAGGACTCTTCCAACCCAACCATTCTATGTGTCTTTAACCTTTAAGGATCCTTCCAACCCAACCATTTTATGGGAATTTGACCTTTAAGGACCCTTCCAACCCAACCATTTTATGGGTCTTTGTCCTTTAAGGACCCTTCCAACCCAACCATTTTATGGGACGTTGACCTCTAAGGACCCTTCCAACCCAACCATTTTATGAGCCTATGATTTTTAAGGTCCCTTCCAACGCAATCGGGTCTTTGACCTTTAAGGACTCTTCCAACCCAACTATGGGACTTTGACCTCTAAGGACCCTTCCAACCCAACCATTCTATGGCTCTCTGATCTTTAAGGACCTTTCCAACCCAACCATTCAGTGATTCTGTGAACCAAAGGCTGCAAGCAGAGTCTGCATTCTCCCTGTGGCATCGCTTGGCACAGGGTGGGAGGACACAAAGCAAGCAAGGCCACTAAAAGGGACAAGGATGAAGTGGCCCAAAAAGCATGTGCACCAGCAGCTGCTTCAAAACTCTGCTCAGCTTCAGTGCTGTGGGGCTCAGCCCCTCTGGCTGCTGAGGGAGGACGGGTGCCCACAGCTGTGTTCTGCAAAGCCTTTGTGCTCTGCATGGTTTGGCTCAGCTGTTTCCTGGAAAAGGGGCTCCTTTGCCTCATATCCAGCAGTTTCCTGCTCCTGAAAAGCTCCTGGTTCTCTTGTTGGCAG
Seq C2 exon
ATCCATAAAATCCTGCAAATTTCAGTGCTGGTGGTGGAGCTCCTGGACACGGGTTCCTCTGTGCTTGTCAGCCTGGAGGACGGCTGGGACATCACCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438:ENSGALT00000020337:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(6.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGAAGGCCTGCGTGC
R:
CTGTGTGGTGATGTCCCAGC
Band lengths:
192-1068
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]