RnoINT0130896 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130268197-130269092:-
Coord C1 exon
chr7:130268913-130269092
Coord A exon
chr7:130268299-130268912
Coord C2 exon
chr7:130268197-130268298
Length
614 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
3' ss Seq
AGGCTTGCCTGTCCATGCAGATA
3' ss Score
7.17
Exon sequences
Seq C1 exon
GGTGTGCGCCCAGACCCTTTGCAACAGTGGGAGCTGGTTCCTATTGAAGTATTTGAGGCAAGGCAGGTGAAAGCCAGCTTCAAGAAATTGTTGAAGGCCTGTGTGCCTGGTTGCCCTGCCACTGAGCCCAGCCCAGCCTCCTTTCTGCGGTCACTGGAGGACTCAGAGTGGCTGATCCAG
Seq A exon
GTCTCTGCATTGCCTCTGCCTCTGCCTCTGCCCACCTGGGTGCTAGGTCTCTCTCTAGTCTGGGCTTGTTTGACATCTGGAGCACGAGGGGGGGGGGGGGCGATAGGCGCTGGCTATGTAGTGTAGTGGTGTGAGGGGCCAGTCTGCTGTGCACAGGAGTGTGGTGTCCAGTGTGGATCACACTGGCCTGTGCTACCGGGCCCTCTGCTGCTTTGCCCTTTTTAGAGAATGAAAATGGGTTGTTTGTTGTGTGCTCGGTGAAAACTAGAGGCTGAGGGATGGGGCTTCTGGCATCTGAAAGGCAAGACTTAACTCTCATTGTGAGACATAGTCTCACAGCCTAGCACTGCTATAACTTGTGGCAGACCTAGTGCTGAGATTACAGACATCTACTGCCACACCCAGCAAAGGACAGGGACTTCTGAATCTGCCTTCCCTGTCATGGGTGTTCTGGGAGGGGTGGGCAGGCTGGAGGAGGAGTGCAAGCATGACCAAGGCAGAGCAGCACGGGTCCGCCCAGTGCTGTAGATACTGCCGGCCTTTCCAGGACTGTGGACGTGTGAGCCTCTGTGTCCTGGTTGGCTTTGGTGTCCAAGGCTTGCCTGTCCATGCAG
Seq C2 exon
ATACACAAGCTGCTGCAGATATCGGTGCTGGTGGTGGAGCTGCTAGACTCAGGCTCCTCTGTCCTTGTGAGCCTGGAGGATGGCTGGGACATCACCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGCCCAGACCCTTTG
R:
CTGAGTGGTGATGTCCCAGC
Band lengths:
279-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]