GgaINT0115179 @ galGal4
Intron Retention
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104014440-104017839:-
Coord C1 exon
chr1:104017704-104017839
Coord A exon
chr1:104014580-104017703
Coord C2 exon
chr1:104014440-104014579
Length
3124 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
CATTCCAATGGAACTTGTAGGTT
3' ss Score
3.53
Exon sequences
Seq C1 exon
AGTAAAATAGTCCGTGTCCTGAACCTTTGGCAGAAAAACGGTGTCTTTAAAATAGAAATCATTCAGCCTCTTCTGGATATGGCAGCAGGAACTAGTACAGCTGCTCCAATGACAGAAAACGCTACTAATAATGAAG
Seq A exon
GTATGAATGACATGAGTGATGGCATTGGTGGACAAAGGGATCAATGAAAGGTCATTTTGATCATAGGATCAAAAGCACCCTCAGCAAGTTTGCTGATGACACCAAGCTGAGCAGTGCGGTTGATAAGTCAGAAAAAAGGGATGTCATCCAGAGAGACTTTGATAAACTCGAGAGATGGGCCTGTGAGAACCTATTGAGGTTCAACAAAGCAGAGTGCAAGGTGCACTTGGCTCAGGGTAATCTCAGATATGCGTATATAAGCTCCTTGAGAGTGGCCCTGCTGAGAAGGACATAAGGATCCTGGTTGTTGAAAAACTGAATGTGAGCCAGCAGCGTGTGCTTGGACTTCAGAAGGCTGATGATATCCTGGGCTCCATCAGAAGAGGCGTAGCCAGCGGAGGTGATTGTCCCTCTCTACTCTGCTCTCATGAGGCCCCATCTGGAGTATTGCATCCAGGTCTGGGGCCCTCAATAAAGGAAAGGTGTGGAGCTTTTGGAGAGGGTCCAGAGGAGGGCTGTGAAAATTATCAGAGGGTTGGGGCACCTCTCCTGTGAAGACAGGTTGAGGGAGTTGGGTTTGTTCAGCCTGAAGAGAAGGCTCCAGGGAAACCTCGTTACAGCCTTCCAGTATTTAAAAGGAGATTATAAACAGAAGGGAAATCACAGCTTTTGCTGCTGCTGCTAGAAAGGTGAATGATATTAGCAAGTCGGTTACTTTCATGTTGAAGTGCCTACTAATAGTTTCAATAGTAACGTATTAATAAATTCAACTTGACTATCACAATTATGTGGACCAACTGAACTCATTCCAAATAAATGCTGATGCCAAATGATTGTTTTCAGAATACCTCAAATCTACATTGTGCGAATGCACACATTTTCCGTCAAGGTGACTTCAGTATCCCTTAAATATTAATAATTATATATTAATATTATAAGTATATATAATAGATATATAATTATATATTAATATTAATAATTATATATTAATAAATATCCCAGTATCTTAAAATATTGTCTTTTCTTGAGTCTGAAATATTTTTCTGATGCTTCTCAGTTTTATAATTCTCATGTTTTTTTTTTAATGTTAGGATCTGCATCAGTAAAGTATGACATTATGTGGAAGAGCTTCATATTACAGTGAATCATTTTAGTATCTGAAAGCAACAGCTGTTTATCTGTTCTAGCATGAGACCCCAAAACATCTTATACTGGTGTTTCAAATTGAGATTCTTGAACAGTAGATTTATACCTGACAGGAGGCTTTACGTGGACTGCTGGTTGAAAGCCACTGACCTAGAGGGCTGAGTAATGACTGCCTTCCCACAGAATTATTACTGACCTATTTTATGCCACATGAAACACTGGTAGTGAGGTTACTGAATTGTGGAGGAGAAAATGCATACCACAGTTCTCTTTCTCTGGAGGGCCTTCTTTTTGAGCTTCTGTATTTGTCTTTGCTTTGGTAATCTTTGTTGCTCTCACCTATGTTGTGAGTAAAGTGTGAGGACAGACATCAAAATAAGGATGCACAGTAGCATTAATAGTCTTCTCCAGTGGTGATACGGAAAGTTCACCTATTGACGGTCTATACATGGCAAGGTGGGGGGGAACATCTTCACGTCTGAACACAAGTGCAGACTGGTGGTTATACAATTTCATTCTGATACGACAGTTGAGTGACACTATTTTTACTGTGTCTCTGTTTCGTCACTGGCTGTCAACAGATAAGGCATTTTTTGCCTGAATATTCATTCTGATTTCAGTCGGATTATTCACATGCACCTGAGGGGATAATTTGGCCCTGAAATAAACCTATTAATGATTAATATAGATATGTTATGAAAGAGAATCTGTTTCACTCATAATGCTACAGTCTATTTAGCAAAAAAAGAGGAAGATAAATGCAAATTTTTCTCCCTTGAGTAAGCTTTCTGAATATATACAGGAAGCAATTTGGGAGTGGAATTATATTTCAAAACAATCACACGTCTTTTTGCAGTATTTTAGCATTTGGCTGCTGGGAAAGAATTATTCAACTTGTTTGTGTCTGCTTTCTGTGCATCAACATTGCAGTAATTTAAACTGCATATAGATGAATGGGTTTAAATAAATTGGTGTTGTGAAGCAAGAATATTTGCTTAGTTTCTCAAACTAAACAATATTTATGTGGTTGTTTTGTTGTTTTTTTTGTAACTTTATTCTATTGAACAGTTTCACAGTATTCCAGTAACATTTATTTGCTGGAGAATAGTTACTTGCTCACAGCATGAAGAAGCTGATGGCATTGCTGCTAATTTACAACACTGTAATTTAAAGCAAAGAGAATGGGAAAGCTGCATGTGTAGACTGAGCTACTAGCGTGCCTTGAAGTGTGATTGTGGTTTTAGTAGGGCTCAGTGGAAATGAGTCTTTTTCTGGCAGAGTTTGTATGTGGTGATTTGTACAATATGAGGAGGGATTTATCAAGCAGAAGCAGGTTTGGCTTTTGCCTATGCAAGAGCGGCATGTGAACAAGCTTTGCCAAAAGAAGGAGATGCTTATGAAACAAATTTTAGAGACTTTTAATTATTACCAGACTTCTCAGCAATAGTTCATTTAATGCTAGAAAATATATTCTTGTTGTCTCTAGTTTAAATATTTCAAGTTAAATGAAGGAATGTGGTTATAAAAATTCAACTTCTCTTAAAGTGAACCATTAGGTGATTTGTTGGAAATATTCATCAAGAAGTACAAGTGTAGATTTTCGAACTTTGAAAATGGAACTGTGGTTTTAAGAGTACTGATGTACATTGCTTGACATTGAGTAATAGTCTTTCTCTTAACTATTCTACAATTGTAAATACCTGAGCATCAAGTTACCATCTAAAATACCATGCTGGGATCGCTTTCAGATAGGCTATTTGTCTAAAAATTTCTGTAAGGAATGAATGGAGCCAGTCATAGGCAAAAGGAATAGAATATGCAATTGATGTAGTTTATATAGGAGTGCAGACTCTCTTCTTGGGTTAAATAAGCTAGTGTGGATAGATAGTTCTTTTGGGGAGGTGAATGTATGCAATGAAGAGTACAGTGAATGTTTTGGAGTAACATATTTCTTTCTCCATTCCAATGGAACTTGTAG
Seq C2 exon
GTTCGCCACCCCCTCCAGCAAAGGTTGCTTCGGAGCCCTCTCAAGTCACTGCTAACTCAGTACCTACTATGCCACAGTTGCCCAGTTCTGATGCCTTTGCAGCTGTAGCTCAGTTGTTTCAAACAACGCAAGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850:ENSGALT00000025555:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.596
Domain overlap (PFAM):
C1:
PF048188=CTD_bind=PD(24.2=34.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]