GgaINT0116404 @ galGal4
Intron Retention
Gene
ENSGALG00000016721 | PLCXD1
Description
PI-PLC X domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001122109]
Coordinates
chr1:129434834-129439432:-
Coord C1 exon
chr1:129439291-129439432
Coord A exon
chr1:129434971-129439290
Coord C2 exon
chr1:129434834-129434970
Length
4320 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTCATTTTTGTATTCTCCAGGGA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GACAGCCTATGAAGTCTTAGGACAGTACTAATGGAAGGCCCTTTGCAAACCTCCATTCACGTGTGCCATGAAAATGCTCAGTGGATGTCAAAATTACCAGAAAAGCTCTGGGATACTCCCCTCTTTAACTTATCTCTTCCAG
Seq A exon
GTAAAGATTAACTTTTGTTCTCTGCTGTTTTGTTAGCATGTCATTTAAGCGTTGGAACATCCTGCTTGTTTTACTTTAGGACGGCTATGTTTTCTTTATTTGTATATGTGGCGGGCAGAAGGGCCAAGGGGAGGGAGAAGAAGCTCTTAGGGGAAAAAAAAAGGACTTCTGTTAGCATCAAGATGTGCAAGATGGTTATGCATCATCATGTCAGATCAGTGTTAATAATCTGAGCTTTTTTAAAAATTACTACCATTTTTTTGGTCATTGCTCTCTGCTGCCTTGAACAGATATATGTATTTTTTTCCTCATTCTCCCTGAAGAAATTCTGGGAGAACCTGCTTTCACTGGCTTGAGGGAAGACTGCTGGCTGGAGGACTGTTAGCTCTTGAGTGCTTTGCCTCCACTATGAAAACAGCACTAACGGAAAATCTAACCCATATTTTTCTCTTGCACTTTTAGATGTGGCTGTTAGGGTGGAAAGCAGCACAGCATCTAGATGGATGTTTTATATAGGTTATGAAATCCTACATTAACTTCAGCAAAGGCATATTTAGAGAGAGGGAAAATCAAGTCCTGTCTACAGTGAGTAGAGCCCTGGGAGAGCCTGAGAACTATGGTGTAATTCTTCAGACTGTCATGTACTAATGGAGTGTGATTAAAAGTGAAAAACAGAAAGTTATTTCATGGCTATTTCTTGGATGTGAAATATAAATTGGTGTTAACATCAAAACAAGCACACCTCTTGGTTTTGGATAAAGCCTATATAAGAGAATCATTCAAAATAGAATCTCTACAGAATGGCTTGGGTTGGAATGGACCCTAAAGATCACTGAGTTCTAACCCTATGCTGTAGGCAGGGCTGCTCCCTACCAGCTGAGGCTGCCCAGGGCCCCATCCCACCTGGCCTTGAGTGCCTCCAGGGATAGGGCACCACAGCTTCTCCGGGCAGCTGTGGCAGCACCTCCCCGTCCTTTGAGTGAAAAAATTCTTCCTAGTATCTAATTAAATTTTTCCCTCTTCTAGATTAAAGCCATTCCCCCTTGTCCTATAATTATCTGCCTATGTAAAAAGTCAGTCTTCCTCCTTGTTATAAGCTCCCTTGAAGTACTAGAAGGCCACAGTGAGGCCTCCTGGGAGCTTTTTCTTCTCCAGGCTGAACAAGACCTGCTGCCTCAGCCTGTCTTCATAGGTGAGGTGCACCAGCCCTCTGGTAATCTTTGTGGCTGTTCTCTTGATCCACTCCAACACCTCCGTGTTTTTCTTGTGCTGGGGGCCCCAAGCCTGGACACAGGGCTGCAGATGGGGCCTAAAAAGGGCAGAATAGAAGGGGACAATCACCTCCCTGTCCCTACTGGCCATCACTCTTTGGATGCAGCCCCAAATACAGTTGCCCTTCTGAGCTACAAGCACACATTGCTCTCTCATGTGCAGCTTTTTGTCCATCAGGATCCTTAAGTCCTTCTCCACAGAGCTGCTCTCCAGTTCTGTTCTTCTCCCATTCTGCAGTTGTACCTGGGATTGCACCAACCTAAGTGCAATGCTTGGCCTTGTTGAACCTCAATGGGTTCTTATGGGCCTATTTTTCAAGTCTGTCCAGGTCTCTCTTGATGACACCTCTTTCTTCTGGTCTATTAACTGTACCACTCAAGTTGATGTCATCAGCAAACTTGCTGAGGGTGTGCTTGATTCCCAATGTCCTGATCATTGATATAAATCTTGAAGAACATTGGTCCCAGTGCAGACCCCTGGGGGACATCGCTTATTACTGACATCCACCTGGACAGAGTCTTTGACCACAGCCCTCAGACCATGACCATTCAAATAATTCATTCTCTACTGAATAGTCTACTCTTCAAATTCTAATCTTTCCAATTTAGAAATAAAAAATGTTATGTGAAACCCTATCAAAGGTCTCGTAGAAGTCCAGGTAGATTATATCAGTTGCTCTTTCTTTGTCTACTGAAGCTGTCATTCCATGATAGGAGGCCACCAGGAGGTAGAGAAACAAGATAAGAAAATAAGTATCTATCTTATGATAGAAGATAGGCAATTCTTTTTTTTTTTTTTTCAATTTTTATATATTGTTCCTCTTGCAAAAATCATTTAAAAAATCAATGTTCCTTGATATAAAAGGAACCATGCTACTTCTAAAGGGCTTTCACAGTGCTGTTTCTTGCTAGAATGCTGTGAACTTGTTGATGTGTGCTTTCGAGTTCTTGACTCTTCTCCTAACAGTGATCTTGGTATTCTTGTGAATGTTTGTTGTTTTCACAGAGAATAGGCAGAAAGAAAAAAATAATTGAAGAATTACATGGAACTGAGTCAGAGAGGATCAAGCTAGGTATTAGGAGAAGTTTCTTCACCAAGAGGGTAGTTGGGCATTGGAATAGGCTTCCTAGGGCCGTGACCACTGCCCCAAGCTGCCAGAGTTCAAGAAGCATTTAGACAACACTGTGAGACATAGGGTTTGAATTTTGGCAGGTCCTATGCACAGCTAGGAGTTGGAGTTGCTGATTCCTGTGGGTTCCTTCCAACTCAGGATATTCTTTAATTCTAAGTCAAGTCAGTTTAAACAAATACTGGATGATTTTTACTGTGCATTGCAGCTCAAGTAGATTGGAAGAAAGCTTCTTCTCCAGTTGACCTACTAAACTGATCTAGCCCAGATCAGAATAGAACAAAACAAGACCAACCGGGTCAAGACAGCTCTAGCAGGTTTTCAGAGGGAGCAAAGTCTGAAGGAAACCCAATTCGGAAACAGAAGCTTACTCATCTCCCCACAGAAGCCAGCCTTGCCCTCCGGTCCTTAGGGCATGGTAAATGTGTCATAACCTAAGGATTATGAGATGACTGGGCTCATCTCAGATAAAGAAGATAACAAGACATGCAAGAAACTTGAGAATGTGATTTCTGAATGCATGACAAGGAGACAGAGGCAACTCTTAGTGGTTGGCACTGTGTTGCACTGGGTTCGGGGCAGGAGTTGTTTAGAGCTCTGACGCTGCCTGGTTTTGTGCTAGCTCTCTATCTTTGAATCAAACTTGCTGTATTGTGGATATACCCTTCTTCATTCTAACTTGGTGATGTCACAAGAAGACACCTAAATGAAAAGTTATTATCCATGATAATGACATCAGCAGATGCAATGCCCATTGATGGAATCATGTTCACTTCTCTTAGACTTGGATTTGGTCCATGGGTACTTAATGGCTTGACTCATACGTCTTTTAAGACAAACTTCTTTGATTGAATGTCCTCATCATTAACCTTCCATCTGTGGTAACCTTGGTTGGATCATTTAAAGCAGGAAAATACAGACATGAACTAGATTTTAAAAGGTGAACAATAGTTTATTGTCTCATTCTATTATTGACTGTTTCAAAGAATTTTTATTTCAGATATGATCTTGTCCTTCCACTTTGGCTACTAAAAGTATCACCACTGGCACCAGTAAGACTGACCTTTTAAGAAGACAGTTTCTAGCATCAGTGATTGCTTTGTTCAAGAGGGGATTTAAAAAAATCAAAATGATTTGCAAATTCCTTGCAGATACCCTGTAAAGATTGCAGCAAATCAGGTCATCAAGTTTTTAGCTGTTCTTACTGACGCTTTATGAAATGAGAAGAAATAATAGAACGAGAAAAAGCTAGCAAGATCACTGACTGCCTGTCCTGAAGGCGTTGTAAGTTGCATCATATGTAGATGAATCTTTACGACAAGAGGTATTTCAGATTTAGTGCTTCAGAGTCAGGCTGGGCATTAGGAGGTATTCATTTACTGTGAGGGTGGTCAAACACTGGAATAGGCTTCCTAGAGAGGTAGTTGATGCCCCATGGCTGTTCAAGAGGCATGTTGATCAGGCAGCTGGACTTAGGGTCTTGGTACATTCCTTCTGTCTATATTCTGTTCTGTATTCTCTACTATATTCTGTCAGCTGTTTATTTCCCCCAAAAAGAGAGTGTTCACATCAAGATATTTGTTTTGGTGGAAGACACTCATTGAAACAGACTGTTTTAATGCAGCGTGAGGCAAATATCAGCAGCGATATGTAGTTTAAGTGGGAACTGCTTTAATGAAAAATATTGAAAATATTGAAAGTGCCTTCCTTTTATGAGGATTTCACACTAATAATGCCAGGTGAGTGAACTCTGTAGGAGCTCACCTTTCTGCCATAACTGCATAACCTGTCAGGCAACATACGTGTGCTTTGTAAACGAAGAGGCATGTCAGGTGTATGTATGAAATGTAGTTGTGTGTTGTGGTGTTTGAGTGATTAAGAAATGACATGTATTTTCTGTTCATTTTTGTATTCTCCAG
Seq C2 exon
GGAGTCATGACACTATGACCTACTGCTTGGATAAGAACTCTGCTGTTAGTGGCAATGAATCCAAGCTGGTGAAGTTTTTAAATAAATGTATGCCCTGCATTGTACGCCCTATTATTATGAAGTGGTCCATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721:ENSGALT00000026984:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0038814=PI-PLC-X=PU(6.9=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]