MmuINT0121639 @ mm10
Intron Retention
Gene
ENSMUSG00000064247 | Plcxd1
Description
phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:MGI Symbol;Acc:MGI:2685422]
Coordinates
chr5:110101016-110101524:+
Coord C1 exon
chr5:110101016-110101105
Coord A exon
chr5:110101106-110101387
Coord C2 exon
chr5:110101388-110101524
Length
282 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGTGACTTGCGTGTCCCCAGGGA
3' ss Score
7.75
Exon sequences
Seq C1 exon
CTGCAGCTCCCATGGGAGACCAGGCAGACTGGATGTCGCAGCTGTGCCCTCAGCTGTGGGATGTCCCCCTGCACCACCTGTCCATCCCAG
Seq A exon
GTGAGTACGGGGCCAACCTCACGTTCTCCGGATGCGGGGGCCAGGCTGAGATGGGGCTTCCGTGGGGGAGCTGTCAATCATTGTCAGTGGCTCTGGCTGTCTGACTTACTGGAGGAATGCGCCACTGACTGGGGTAGAGGGGCAGCTGGGGGGTGACAGGGGCTGGACACAGAGGCCTTAAGCCCCGCCCCTTCCAACTTGTCAGTCACAGGAGACCCTGACTACTTGGGGCTCCACGGGGCGTCAGGGGCGGGATATGACCGGTGACTTGCGTGTCCCCAG
Seq C2 exon
GGAGCCACGACACGATGACATACTGCCTGAACCGTAAGTCTCGGATCTCCCGTGCAAGTTCGTGGCTACTGCACCTGTTGGGCCGGGTCGTGCCATTCATCACCGGGCCCGTGGTGATGAAATGGTCGGTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064247:ENSMUST00000086687:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(10.8=40.7)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGATGTCGCAGCTGTG
R:
TGACCGACCATTTCATCACCAC
Band lengths:
196-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types