HsaINT1027307 @ hg38
Intron Retention
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:284167-288869:+
Coord C1 exon
chrX:284167-284314
Coord A exon
chrX:284315-288732
Coord C2 exon
chrX:288733-288869
Length
4418 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGTGTGTGCTTTGCTCTCAGGGA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTTGCCCAGGGCTCACCTCTGATGGGTGGGCAGGTGAGCGCTTCCAACAGCTTCTCGAGGCTGCACTGCAGAAATGCCAACGAGGACTGGATGTCGGCACTGTGTCCCCGGCTCTGGGATGTGCCCCTCCACCACCTCTCCATCCCAG
Seq A exon
GTGAGGTTGGGGTGGGGCAGGGGCCGTTGCCTCTATCCCAGGTGACGGCAGGGTGGGGCGGGAGCTGTGGCGTCTGCATTCCCCAGTGGGGACGCTGGCTGTAGGAGCAATCCTGGGTGTAGGGAAATCCTAGAAAGCACACTGATGTGGACACACACATACACACAGTGCACACGTGTGTGCATACACATATGTACATAGTCATGGACATGCACAGACATGCATACACACAGGCATGCACACATGTGCACACATACACAGGCATACATGCACACACGCACACACGCACACACGCACACATGCACATCTGCACACGCACATCTGCACACACACATGCACATCTGCACACACACATGCACATCTGCACACATACGCATGTGCATACTGTGTTGGTCTGTTCTCACGCTGCTAACAAAGACATACCCGAGACTGGGTAATTTATAAAAGAGGTTTAATGGACTCAGTTCCACCTGGCTGGGGAGGCCTCACAATCACGGCAGAAGGTGAATGCGGAGCAAAGTCACATGTTACATGGTGGCAGCCAACAGAGCGTGTGCTGGAGAACTGCCCTTTGTACAACCATCAGATCTCGTGAGACTTATTCACGATCACGAGAACAGCATGGGAAAGACCCGCCCCGTGATTCGGTGACCTCCCACCAGGTCCCTCCCATGACAGATGGGAATTATGGGAGCTACAATTCAAGATGAGATTTGGGTGGGGACACAGCCGAGCCATATCACATACATAGGTGCACATAGGCACACATGCAGGCACACACAGACACATACATACACACACACATGCATGCGCACACACATACATGCATGCACACATGCACATCCCCACACATATGCACATGGATGCATATACATGCACACACACAGGTGTACACACATGCAGGCACATGTATACATGGATGTAGGCACATACTAATGCACACATGTATACATGCACATAGGCTCATACACACATGGATGCACATACACATGCATGCACATGTGCGGGTGTGTACACATGCACATGCACACGTGTACACATGTACACACATGCACACATGTATATATATATTTGCACCTATGCACACATATATACACCTGCAGATATACACAGGTGTAGACATGTACATGCACAGACACACGTGCACACATAAACATTTGCACCTATGCACGCAGAGACACGTCTATGCAATGCATGTATACACGTGTACACACGTACATGCATGCACACAGACATACACATGTACACATTTGCACCTATTCACATAGACATACATGAATGCACATATGCACACGTGTACACAGGCACACATGCACATGCACACGCGTGTACACACATGCACACACGTAGACACACGTCCATGCACACAGGAACACAGGTACATGTTTAAACACAGGCACACACATGCACACTCACATATAGGCATACGGACACACATACACATGCACACAGATACGTATTGTCAACCTAAGGAAATAAACTTAGACAAAATTAATATAAGTAGGGGGTTTCCTTGAGCCACATTTGAGGACTGCAGCCCAGGAAACCCTCCAACTCGCCTTAGGAAGTGGCTGTGGAGAACAACGTCGAGACGGGAGCTTCTAAAGAAAGTGCACATCAGGAGAGGGGGTGATGATGAAAGCTGTTTTTCAGGAATTCATGTGGGTTACTGAAGTGGCATCGAGCACTGATCGCGTTCTTCCTTGCAATGTAGGGAATGAGTTATGGTGCCCCAGTGTGACATCCTGAGGTTAATTTTTTTTTTTTGAGACGGAGTTTTGCTCTTATCGCCCAGGCTCGAGTGCAGTGGCTCCACCTCAGCTCATCGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACGCTCCACTATGCCTGGCTGATTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTGGTCAAGCTGGTCTCGAACTCCCGACCTCAGGCAATCCACCTGCCTCGGCCTCCCAAAGTGCTGGCATTGCAGACATGAGCTATTGCACCCGACATCTTAGGTTAATTTGTAGAGATGCGGGGCATCTGTCAGTCTAGAGCTGACCTAGTAAGTAGCTTCCAGGGGTGATACTGTAGCAGGACCAGCCGCAGACAAAACTCAGACACCGGATTAAAGAAAGAAGAGGTTTCTTTGGCCGGGAGCTTCGGCAGACTCACATCTTAAGAGCCGAGCTCCTTAAAAAAGAAATTCTTGGCCTTTTTAAAGGCTTACAACTCTGAGGGGTCCACGTGAAGGGGTCGTGATAAATCAAGCAAGTGTGGGGAACGTGACTGGGGGCTACATGTGTCAGCTAACAGAACAGAAAGTTTTGTAACGCTTTTTCATACAACGTCTGGCATTTACAGATAACAGAAGTGGTTTAGGTTATGGATTGATATTATTTTAACTCCCAGGGCTGGGTGGTGGTGCCAAGGTTGTCTGGCTATTTATCTTACTTCTGTTTCTTTCCAACCTTTTGCTTTCTCCTGTCTTATAAACTAGGCAAGGTGGGGGTAGGGGGCAGCAGGAGAAGTACTGGTCTCCTTCCTTAACACCTTAGCTCAAGATCGGGGGAGCAGGTGACTGTGGCTTCGTTCCAATGCCTCTCGGGGTCTGGGGATTTAAAGGGGGTCCACGTTCCTCAGAGGATGTAAAGGGGCTTCACGTTCCTCAGGGGATTTAAAGGGGGAAGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGAGGATCACTTGAGTTTAGGAGTTTGAGAGCAGCCTGGGCAACATAGTGAGGCCCCATCTCTGCAAATATGTATATACACACACACATTTATATGTAAGTGTACATATTTATATATAAACATACATATTTATATTTATATATAATATATAAATAAGTAAATGTAAAATATAAAATATATATCATATATTTATATAAATATATGATACATAAGTACATTTATATATTATATTTATAAACATAATATGTGGATATATATTTTATATATTTATATAAATACATATTTATGCAAAAATATGTATTTATGTAAATATATACTAATATATGTTTATATATAGATATATATACACTATATATGTTTATATATAGAATATATACTATATATGTTTATATATAGATATAGATACTATATATGTTTATATATAGATATAGATACTATATATGTTTATATATAGATATAGATACTATATATGTTTATATATAGATATAGATACTATATATGTTTATATATAGATATAGATACTATATATGTTTATATATAGATATAGATACTATATATGTTTATGGATATAGATACTATATATCTTTGTTTATAGATATAGATACTATATATGTTTATATATAGATATATGTCATATATATCTTAAATATATATATCTTAAATATAGATATATTTATATCTATATTTAAGAAATAACAACTACGTGTCATAGGCAGGAAATGCAAACGTCAGCCATCAGTCAAACTCTACAAAGGTCTGTGTTTCTTGCGGTTACCATAACAAGTGAGCACACGTCAGGAGGCGGCAAAGAACAGAAATTTACTCTCTCCCAGTTCTAGATACAGAAATCTGAAGTCAAGATATGGGCAGGACCACACGTCCTCCTGAGGCTCTAGGGGAGGGTCCTTCCTGCCTCTCCCAGCTCCTGGGGGCTCCAGGCATCCCTGGGCTTGTGGCCGCATCACTCCAGTCTCTGCCTCCATCTCCACGTGGCCTCCTCCTCTGGGTCTGTGTCTCCTAAGGACACCTGTCATTGCATTTAGGACCCAGCACAAAGCCAAGATGACTTCATCTTGAGCATTTTGAGAGCATGTGTAAAGACCCTATTTCCAAACAGGATCCCATTCACAGGTTCTGGGCAGGGGGTTAGGACTTGAACAGCTCTTTTGGGGATCACCACTCAAGTCATTGAAATTGTATTCAGTTCCTTCTAGAGGCTCTAGAGTGGGGGATCCTTCCTGCCTCTCCCAGCTCCTGGGGGCTCCAGGCATCCCTGGGCTTGTGGCCGCATCACTCCAGTCTCTGCCTCCGTCTCCACGAGGCCTCCTCCTCTGTGTCTGTCTCCTCCTCTTGTGTCTTAGACGGACACCTGTCACTGGATTTGGGGGCCCGCCCTACTCCAGGATGATCTCATTTCAACCTAATGATATCTGCAGAGACCCTGTTTCAACACGGGTCGTGTTCCCAGGTTCCAGTGGACGTGAGTTTTGGGGGTCAGCGTGCACCCCTCCCGCCATACCTGTGCCTGTGCTGTGGGCGGGCAGCAGCCTGTGCTGTAGGCGGGCTGTGGAGCGACTCACAGCAGGTGGCGGGGACGGACTCGTGGTGACATGTCCGCGTGTGTGCTTTGCTCTCAG
Seq C2 exon
GGAGCCACGACACGATGACGTACTGCCTGAACAAGAAGTCCCCCATTTCGCACGAGGAGTCCCGGCTGCTGCAGCTGCTGAACAAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAAATGGTCCGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378:ENST00000399012:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=PU(6.5=25.6)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains