GgaINT0116822 @ galGal3
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
NA
Coordinates
chr1:107930310-107932684:-
Coord C1 exon
chr1:107932559-107932684
Coord A exon
chr1:107930419-107932558
Coord C2 exon
chr1:107930310-107930418
Length
2140 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTTTTCTTTTTAAATCCTAGAAA
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTGGATGTTCTCTTCGGGAATCTGACTGAAATGGTAGCATTTCAGGTAGAGTTCCTGAAAACTCTTGAAGATGGAGTAAGGCTGGTTCCAGATCTGGAAAAGCTTGAAAAAGTTGAGCAATTTAAG
Seq A exon
GTAAACTCATTATCTATTATTTAGGAAGAAGCTTTTCACTCAGAGGGTGGTGACGCACTGGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGAAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGATGGTTGGCGACCCTGCACATAGCAGGTTGGGTTGAAACTAGATGGTCATTGTGATCCTTTTCAACCCAGGCCATTCTATGATTCTATGTACATTCAGAGTACGCTCACACTTAAATGTTATAATAAATGATGAAATATATCTTAGAAGTTGTCCTCTAACACTCTTTATTGTATTTGTTTTACTTACTGTCAATCTTTTTGTGAAAACTAGCACTTTAGATTGGTTGCTAGCTAATGCTGAGGCTGTTGGAAGACCATCCTGCTATTACTTTGCTTCGTGTTACATTTATCTGTACAGAGCACTAGAAGTATGTAACACCATGTGTTTAGAGATACTATTCTTGCTCTTCTGTCAGATTTCTTGTCTCAAGCTGTAAAGAAAAACTAGAAATGGAATATTACATAAGATCTTTGTTCTGACAAGTCTAATATAGCAGTTCAGAAGCCCACTGGGGCTCTGGTACAGAATATAAATTGAGTTCTGCAGTTAGGCTTTTTGAGCACAGCAGAACTATACAGCAACTGCTTCCAAGTATCGACACTTGTGCTTGAAAGTTAGAAGTGTAAACTAAAGACATATATATTTCATTAAAAAATGAAAAAAGATTAGGAAAATGCAGAAGTAGTTTTGTGTCTTCTGCAGTACGTGATGTACTGGATTTCTGGCAAGTAGCTCAAACAGTGTTTTGTCTTTTGGGAACTTTTTCATGCTTAGACAGCTCACCTTGGTAGAGGACAGAATGTTGTGATGAATAATAACAACTCCATTGGGACTGCACTTTGACTAACTTGCAGGCGTGGAAGAACTGCTGAAAAAAGTTGACTTTGTGTGTTTCTGTGCTTCTTGCTGTCAGGTACTCAATAAAAATCAGCATCAGTCGTGAATGCTGCTATCCTAACTTTTGCTTTGTAGAAAATGTGCCTTTAATGGAGAATGCAAACACACAGGCTTTCCCACTAAAAAAAAAAAAAAAAGAAGTTTGATCACTGTTTTTAGCTTAAGAAGAGAAATTAGGAAGAGTCCTCCTCATGGAGAGAATTCTGCTCTGAGTAAGATTATTTCCACCTTTCTACGTAAACTGTGCATCAAATTTATTTTTCACTTCTGTCCTATAGCCGTGGTCTGAAAGCAGTTGCAAAATTGAATGTCTGGACTTGGTTTCAGTTCTGCAGTTTGCTTCCTTCTGCTGACTGTAGGCAAACTGCCTATATGTTGTCTTGTCTCCTTCCACCCCATGCTGTTGTTCCTTGGTGGGTGGTGGAGCAAAGGCTTGACTGTGACATAAACATCTGTATTATATTTGGACCATAACACAAACTAATTTTCAGCAGAGTAGGGACTTCTCATTTTTTGTGCAGAGGGATACTAGTCCTGCTTGCAGTTCCTCAGTGTCTGATCCATTGCAAATTTGGATACACCCAGTCCCTCCTATGGTGTCTGGCCACAAGAACATTTTAAGCTCAGGCATTCAAATATAGTTCTGGAGCCGTGAAGCTAGTTCCGCTTTAGTCAATGCTGTCTGCAGATCATCCTGACTGGGAACACAGCTAATGATGTTAACCATGTAGCCTGTATCCAGGCTGGATTCTGGCACCAAGGCTGGTCCTATTTTCTGTCATGTGGTGTGAAAACTGTCTAAAAATGTAGTATCTGTCATCTGAAAGCTAAATGAAAACCCTCCATCCCACTCCTGCCTTTCTTTTCTTCCCCTGTGTTTCTAACCCATCATAAGGTCAGGGAGGAAAACCCCATTCTCAGTCCTACCATCAGCCTTCCAACGCATCCCTGTATTGTTGCTCTGACCTTTCTCTGCTGATGGAGGCTCCCAGTTGGGAACCACAATTGATACTTAAGGCAGCATTTAGAAAAGCAGTGCTTTTGCACAACGCTCTGTGAAAGCTCCCTATCTTCTAGTTAGCTTGACTTCAGGTGACTTACCAGGAGGGAAAATAACTAACTGGTCTTCACATGCTTTTCTTTTTAAATCCTAG
Seq C2 exon
AAAGTGCTGTTTTCCTTGGGTGGATCCTTCCTTTACTACGCCGACCGTTTCAAGCTGTACAGTGCCTTCTGTGCCAGCCACACGAAAGTCCCAAAAGTACTGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]