RnoINT0150913 @ rn6
Intron Retention
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29954621-29957137:-
Coord C1 exon
chr11:29957012-29957137
Coord A exon
chr11:29954730-29957011
Coord C2 exon
chr11:29954621-29954729
Length
2282 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATGTTCTCTCTTTGATCTAGAAA
3' ss Score
9.09
Exon sequences
Seq C1 exon
CTCGATGTACTCTTTGGAAATTTAACCGAAATGGTGGAGTTTCAAGTTGAGTTCCTTAAAACTCTAGAAGATGGAGTTAGACTGGTCCCTGACTTGGAAAAGCTTGAGAAGGTTGACCAGTTTAAG
Seq A exon
GTAAGTCCCGTCCCAAGCTGCCTAAAGCTGCCCCTCTGTGCTGCTGCTGGCTACCTTGTGGGTCAGGGTGAACCCTGGCACTGTGCTGCAGGCAGAGCTCTGATCTTCCAGAGCTCAGAGCACCTAGAACTCCGTAGGCTGTCCCAGTGGGAGGCGTGCTGGGGGAGGGTGGGGGTGGGGAGGGACCCAGCTGTCTGATGCTGTTGGCTTGTTTATACTTTTTTAGCCATCAGTGTCTCCTTTGGAAGCAGCATGGAGCTGAAGGTTACATTAGCTAGTAACAAAATTAAATTAGCCCCTCGGGTCTCAGTAAAATGAGTCCACCCTGTTCTGGGGAACCATGATGGACATACTAATCCCTGTCCAGAGGCACAGCGACCTCGTGGTCCTAGTGAGGATTGTGACTAGCACCCGAGGAAGGGTTACTCCCCCGTGGCTCATTTCCTCTCCCCTGGTTCCTATTCCCTGGAAGGAATTTTCTGTTCCAAATTTCAAATCAACAAAACTCATCGATGTGTGTACTGACTTACATGTCACCCACTGTGCTCTTAAAACCAGGGTCATCTGTGATGTAATTGACAAAGCCCCGCCCTTATTTAAAGTACAGGATCTGAGACTATGTATCTATGAGCGTATACACACATACACACACACTCATACACAAGCACATACATACACAAACGAACATATAGGCATAGACACATACATGTGCACACATGCAATCCGGAGTGCCCGTGAAGCCGTCACAGTAGTCAGGACAATGACATAATCTCTGAAGGTCAGTTCCTGTCACTTGTGATTTCCTGCCCCTGCCTCGCACCCGCAGGCAGCCATGCCCTGCTTCCTGATAACGTGGGCATGTTCACATCTGGCCGATGGGACTTCCTCTTGGGAATGTGCAGCTAGGCTGTGGGGCCTTCAGAAGTCCGGCAGGTGAGCCGCACTGGGCAGCTGCAGTGTGGGAACCTCCCCCCCACCGTGTGCCCCACGTCCGAGAAGCTTTTATCAGGCTACTTTCTGGTAAACACTTAGCCGCCGTTACTGTAAACAAAGGGGTGCTGTTTCGGGGTCCTTCCCAGCTTCCTGCTTAATCTGTGATTATGACTGGGATGGCCACGTCTCACATAGTCCCGCAGCCGTGGCCCTTTGGAAGTAGAGGAACTGAACATGGAGGAGGAGATTTCAGGACTCTGGGCACTGTGGAGCCTGTTAAGTGTGGTCTGAAGTACACATCCCCTTTACTAGACCGACCGACCCTCCTCCACACCGTGTGGTGGATAAACTGCGTATCTGGGAGCTCAGGGTACCATTCGCATCTGAGGTCTTAAGCCCTTGCTTGGAATTCATTCTTAGAAATTATTTATCATTATTATTGGTGTCACAGTGAGCACTAGCAGGCCAGTCGGCTCTCCCCTTCCACGGGTTCCAGGGATAGAAGTCCCCAGGTGTTGGTAGCAGGTAATCTTAACTGCCACGTCAGTCCTGTGTTTTAATTCTAAGCCTAAAGAAAGCCTCTCCTGAGCCTAAGCAAGACCAGGCCCTCGTGGACGTCTGGAAGATGTTTCTCTGAGGCTAGCTCTTCATTCATAAGTCAAGTGGGTGGGATGAAACGGGGCAGTGTGTCCAGGCTGAGGAGACGACACCTGCTTTCCTCACTCAAACAACATTGGCATTCCTTAGGTTCTTATCTGCTCCCTGGGAGAGATGGGGAAGGTGGAGGTGGTAACCAGGGAAATGTCTCTTCAGATTTGAGGTGTAAACCTCTCCTGCATTTATCTGGTTTGTCCCTTCCGTCTCCCCATACATATGTGGCTCACGGGGGAAGTCAGGACGTTTCCGCCTTCCCAAAAGTCTGTAATTTTCTCATCAGCATTCAAACATCAGATGGGTCATTCAATACTGAGAAGACAAAAATCCAACATCAATAGAATTCTTTTTATTTTATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAATAGAATTCTTTTTAAACCGAAATACTTTCTCCACAACCAATTTCAGGATATCAGTGAACAAAGAAAGATTTTGACAGGCACGGAGACTCGGGTTGGCGCTGAGAAAGACCTCGGTGATCTCCCTGCCCTTGCCTGGTCTACATAAGGAGGGACACGACATTGCATGTTCTCTCTTTGATCTAG
Seq C2 exon
AAAGTGCTGTTCTCTCTGGGGGGATCCTTCCTGTACTACGCGGACCGCTTCAAGCTCTACAGTGCCTTCTGTGCGAGCCATACGAAAGTCCCCAAGGTCCTGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569:ENSRNOT00000046486:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]