HsaINT0167069 @ hg38
Intron Retention
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr21:31146895-31152761:-
Coord C1 exon
chr21:31152636-31152761
Coord A exon
chr21:31147004-31152635
Coord C2 exon
chr21:31146895-31147003
Length
5632 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCTTTTCTCGTCAAATCCAGAAA
3' ss Score
7.49
Exon sequences
Seq C1 exon
CTTGACGTGCTTTTTGGAAATTTAACGGAAATGGTAGAGTTTCAAGTAGAATTCCTTAAAACTCTAGAAGATGGAGTGAGACTGGTACCTGATTTGGAAAAGCTTGAGAAGGTTGATCAATTTAAG
Seq A exon
GTAAATAGTGCAAAGCTGCCTCCAGCGTCAGGGCTATAGTGTGGCTCAAGTTGAATCCCCTGATCGTGTTGATGTCTTCATTGGAGGGCCACAGTGGGGTCTGTTCCTAAGGGTGTCTGAGAGGGAGGGGAATGGAGTGTGTCTTGCTGGTCTGGCTAAGGGAAGCCCAATGCCATCAATTTGCATTAAACTGGTGCAGCTGCTGGCTTTTACGTGAGAAGAAGTACCAACCTTGACCTTTTGTTTGGTTTATGTGGGGGCCTTTAATGCTTTAGCTATCAGTGAATTAGAATAGGCACTCCTGGCTGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACGTGGCAAAATCCCATCTCTACAAAAAGTATAAAAATTAGCTGGGCATGGTGGTGGGCACCTGTAATTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGAGATGCAGAGGTTGCAGTGAGCCGAGATTGCAGCACTGCTCTCCAGTCTGGGGGACAAGAACGAGGCTCCGTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAGGCACTTCTGGTTACCCAGTAAACAAATTAATTTATCGTGTTCTGGGAAACTTTGCTTAATGGAAATGCTTATCATTATCCAGGGGAAAGACAATCTTCCAGCACACGGTGTCCTTGCAGCCTAATGAGGATTTATGACTAGTGCCTTAGCAAGGATGCTTATTTCCTCTCCCCTGCTTGGCTTTCTTTTATTGCAGATTTCCTGTGTTGCACCTCCAATTAACAAAGCACATTGCTTCATGTGTTGGCTTACGTGTCACCCTCATGTGCTTTAACAGATTAATTGGGGTATAATTGTGCAGTAGAATATGCTGCATATACTTAGTGTGGAATTTGATGAATTCACACACACACACCCCTATGAAACCATCGTCACAATCAGGACAATGCACATAATCATTTCTCCTGAAAGTCTTGTCCTGCCCTTTTGTGGTTTTTCTCTTCTGCCTCTTACTGCCCTCCCACTCTACCCCTGCTCCATGCTCTGCTCCCTGTTATGTTAAATATGTTTGCATTCTGGAATTTTATATTGGTGGAATCCCATACCAAGTACCCGTTTTTCTGGGGCTGCTTCCACTCAGCGTAGTTGTACTGAGATCCGTCCATATTGCTGTGTGTATCAAGAGCTCATCCCTTTTCATTGCTGCATTGTCTTCCATTGAATGGATAGACCACACTTTGTTATCCATTCACCTTTCTTGGGCATTTGGGTTGTTTCCAGTTTTTGGTAATTACAAATAAAGCTGCTGTGAACATATGTGTACAAGTTTTAGTATGGATATATGCTCTCATTTCTCTTAAGTACCCAGGAAGGGAATGGTTGGGTCATATGGTAAGGGTATGTTTAACTTTTTAAGAAACTGCTCAACTGTTTTACAAAGTGGTTATACCATTGCAGCTCCCTCCAGCAGTTCCTCCTCATTGTTCTGCTGAGGTCACAGTCACTTTCTCTTTTTAGCTATTCTAACAGGTGTGTAGTAGCAGCTCATTATGGTTCTAATTTTAATTTCCCTAATGACTTACGATGATGAGCGTCTTCTGTTATGTGCTTGTTTTTTGCCCTCAGTATATCCACCTTGGTGAAGTGTTTGTTCAAATAATTTGCTCATTTATTTTACTGGGTTATTTGTTTACTAATATTGAGTTTTGAGAGTTCTTTGTATATCCTTTATAAGTCCTTTATCAGATACATGATTTGTAAATATTTTTTTCTGTATTTGAGGCCCATCTTTTCATTTTCTTGACAGTGCCCTTCACAGAGCAGAAGTTTTTAATTTTGATGAAGTACAGTTTTTCAAATTTTCCCTTTTTGAATCACACTTTTGGTGTCTTATCTATGAAATCTTTGCCTAAAGATTTTTTCCTGTGTTTACTCTTAGAAGTTTTGTAGTTTTCTCTTAGAAGTTTTATAGTTTTACATTTAGACTTCTGATCTATTTGAACTTAAATTTGTTATGGTTTAATGTAGGAATCAAAGTTAATTTGTGTGTGTATGAATATCCAATTTTTCTAATCCTGTTTGTTGCAATGGCTGTCGTTTGATCCTTTTTCCACTCAATTTCTTTTGCATTTGTGTTAAGAATGAGCTGTTCATATGTGTATAGGCCCCCATACACTTTGCCTGCCTTCTAACACTTGCAGGAATCTAGCTGTGTAATGTTAGGGTACAAGTTTTGGAGCCGGGGTAAAGACTGCCTCACCTCGATATTCTACCTCAATATATGTTTTTTTGTGTATGTGTTATCTCTTTACATTGCCTCTCTGCAACAGGAGCTACTAAGAATTACATACAAACACACATAAGTATGTGAATATATATGTATATATTATAGGTGTTCATTTTTGTTTGGGTATAATTTCAGACTTACAGAAAAGTTACAAGAATAGTGCAGAGAATTCCTGAATACCCTTCATCTAGATTCCCCAAATGGTAGCATTGGGCTACATTTGCTTTATTCTTTCTTTCCCTCCCTGTCTCCTATGTGTATATGTATCCATATGTGCATGTGTGTACATTATGCATGTATGGTGTGTCTATGTGTACATATAAAATATTTTCTTCCAAAACCATTTAAGAGAAAGTTGTAGGCACAATAATATATCTTTCACCCTAAATACTCCATATAGTTCATTTTTGTGTTCAAAAATTGCTTGTTGGTGGTTATGCTCTTCATTTGAAATAAGTTAGGTTCATTGTAGTGATACCTGTTTTCTAAATTAGTAAATTGATAATTTGCACAGTAGAACACATAATGTGGCCTGGTAGTTAGATAAACAAAAAAGCTGCTTAATAAAAATGGATATATTCTGGAGGCCAGGGTTGGTTAAAATATGGTTATAGACATACTTTAAAATACTACGTTTTAACCTAAAGTAGCTAACATTCATTATATTCATTTACAAGTCTTTTGCTGTGGGGCTGGTTCTTTGAGTTTGGGTCCAGTTAATCACTAAAAAGATTCACAAAAAGGAGACTTTGGGTACCAGAACTTTGATATAGACTTGAGTGTACTGAGAGCAGTGTTATTCTAGGGAGAGGCAGGTACATTGCTTCTTTTAGTGACAGGTGGAGCATCTCAAATCTGAAAATCTGAAATCCAAACTGCTCTAAAATTGGAAACTTTTTGAGTGCCAACATGTTGCTCTAAGGAAATGGCCATTGGAGCATTCTGGATTTTCGATTTTTGATGCTCAACCAGTAAATATAATGCAGATATTCCCAAATATGAAAAAATATGAAATCTGAAGTACTTCTGGTCACAAGTATTTTGGATCAAGGATACCAAACCGGTACTTCCATACTCAACCATCACTCTTCTCAATTCCACATAAGTGGGACCCTCTTCATATACCTTCACTTTGCTGTTTATGGCACAATCTGATTGTCTCCATTCCATCTGTAAGGTGAGATGGCTCATGAACACTAGTGTGCCTGCCTGCAGGATTCTCTCCAGGCTCTCTGAGTTGGTTTCCAGATTTGCTCCCAAACCTGTTGCTGCTGATTTCCACAATTGCTGCTCTTTTTAAACTCCTCATTGTATATTTGACCAAAAAAAAAAGAAAAAGAAAAACTTGTTAAAATCTTCAAACTGTGTTGCATAGAGCACTAGTCTCAAGGTAGTATCAGAAGGAAATAATTAGTTCTGATGTCAAATAAGTTTTGATAAAATTTTCATTTGGAAATTTGCAATGTACGTCAGCCTGTGAGAAGCGTTCTGAAGTCCTACAGAACAGAAACATTGGGGAAGTGGAGTCTTTGTGTATAAACCCTCATATTTGTGTGCACATTGTTCCCTGAGAATCAATTTTTAAGGCGGGAGGAATAAGTGAATACCTTAGTGTTTCATCTGTGGTTATGGTAGGGTAAATAAACAGTAAATATTAAGTTAAATAAATGAATGGCTTTAGGATGGCTAAAGGGAGGGGTTACATTTAGCACATTTTCTTCCACAACTTTTTTTGCTTAATTCTTGGGTATGACTCTGTATTAGTTCATTTTCACATTGCTATGAAGAAATACCTGAGATTGGGTAATTTGTAAAGAAAAAGAGGTTTAATGGACTCACAGTCCCTCATGGCTGGGGAGGCCTCAGGAGGAGCAAAGTCACATCTTACATGGCGGCAGGCAAGAGAGCGTGTGCAGGGGAACCGCCCTTTATAAAAACCATCAGATCTCCTGAGACTTATTCGCTATCATGAGAACAGCACAGGAAAAACCTGCCTCCATTATTCAGTTACCTCTCACAACATATGGGGATTATGGGAGCTACAATTCAAGGTGAGATTTGAGTGAGGACACAGCCAAACCATATCAGGCTCCAAGGATAACTCCCTCACAGAGTCCGATGGCAGTACCCAGGGTACTCCTGCTGACACCCTCCAAGCCAGGGTGGAGATTTGCGGAGGGCTTGGAAAGTAAAGGAGGAAAAGGAGAACACGTAAGAAGAGTAGTGAGGCATCTAATTACCAATTATGTATGGTTTAAAATAAACCTTTTTTTTTTTTTTTTTTTTTTTTGGTCATGGACAGACTCAGAATCCTCTGCATTGTTCATTAGATAAATTGCACTTTGGGGAACCTAGTTTGTTACTCAAATTCAAAACCTTATTTCTTTGCTTGAACCCTGCCTTTTAATTCTAAGCCTCAATAAGCTAAATAAGGTCCCTCTCTAAACAAGACTCTTTCAGTGTGAAACAGAAGGTGTTTTTCTGAGGCCATATATATATATATATATTTTAATATAATATATTAATATAATATATTAATTATATATTATATATTTTTATATATTATATATTTTATATATTATATAAAATATATATTTTATAGAATATATATTTATATATATCTATATATTATATATTTACATATAACATATCTCTATATATAATGTGTGGGATACAAAGTATCTTCTCAGGCATAGTAAAATCTTAATGAGAAGGCCTCTACCCAGTTGTGATCCTACTGGGACAGGGCAGAGAGGCTGGGGAGATGATACCTGACTTCCATAGTTGAGCGTGTTTCTTCCTTTAATATTGCTTATGTTCTTAGTTGCTAGAGGAGAAGGTGGTTTTGGAAGGCATGAAGATAGTGATCAGAGGAACATGTTTTCTGCTTCGGGGGCGGGAGGTATGAGCATTTCCTGCCTTTATTTAGTTTGCCAACAGGAGCTAATGAGAGAATTGAGATTTCTGACTTTTCCAAAGTATATACTTTCTCATCAACATTCAAACAGCCCGGATAGGTTATTAAAAGACACAGACCTGGAAAACCAGGGACATCTACCCTATAAATACTAAGAAGACAAAAAGTCCAACACCTTTTACACAAACTTGTACAAGCACATACTTTGTAATGGGCAATTTTAGGGCATTTGATAGCAAAGAAAGGCTCTGACAGGCACGGAAGATGTTGATTTGTGGGGTGGGCCAGGCAGATGTGAGCTCCCTGCCATAACCTGCTGATATTTCCAGTGGAGGAAGGAAACAACCAACTGTGCCTTTTCTCGTCAAATCCAG
Seq C2 exon
AAAGTGCTGTTCTCTCTGGGGGGATCATTCCTGTATTATGCTGACCGCTTCAAGCTCTACAGTGCCTTCTGCGCCAGCCACACAAAAGTTCCCAAGGTCCTGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299:ENST00000286827:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(21.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains