GgaINT0116826 @ galGal4
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103796508-103797817:-
Coord C1 exon
chr1:103797709-103797817
Coord A exon
chr1:103796567-103797708
Coord C2 exon
chr1:103796508-103796566
Length
1142 bp
Sequences
Splice sites
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
3' ss Seq
TTTTTAACTTTCTTCTCCAGTGT
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTTGCAGACCTTTCCATGGGGGATTTGCTCTTGCATAACACAGTGATATGGCTTAATCCTCCTGCTTCACTGGGGAAATGGAAGAAGGAACCTGAGCTGGCAGCATTTG
Seq A exon
GTTTGTATCCTAGTAATTTTATTTCAGATGTGTGAGAAACTGTATCATGTTCCTTACCAGATACTTGTGGAAGGTAGTTGAGCATTGTCTTCTGTAACATTGGCTGGATCTTAAAGCTGTACTTGTCCCTCTGCTGTAACGGTAAAATTCTGTTCTGTGTTCATCTAAATCTTGTAAAAAAAATTGGAGGTGATTGCTGTAGTAGTGCAAGAGATTTTTAAACCCATATTCCAGGCTATATATTGTGAACTATGCAGAAGGGTATTTGCATCTGAAAAGATACGCTTTGGTAGCCTGATATATGTGCTATGTAACTGCTTCACATCCTGTTGGATAGGGTTAAGGCTTGATGGGGCTTTGCCTTCTTTCTTCATGCCTTTTGCCAAAAATGTTTTGAGCGTCTAAACTTTAGAGAGTACTTAAAGCCAAGTCAGGACTCCCAGAGAATTGCTTCAGAGTAGTCTGTCTTCCTCCCAAGTACTGTTTCTTGGGTGGCCAGATGAGAAGTTGAAGATGCTGTTGGCATAGATTTCAAGGTCTTTCCACTGCATTGAAGCACGATCCATTGCAAAGTTAGTGGAGCGCTTATATTGGCAAATCATGTACTTGTTACTTTCAGAATTAAGTCAAGCTAAGCACTACTTATTAGGCTTTGTTCCTGAACTCCTTCATAAGCAATGGGTTTTTATGTTGCTGTTTTCAGAAAGCTATGCAGGCTAGAAAGCCATTGATTTTGATTTTATTTTTGTTTTATACCAAACAGCTTATGAATAGAGAGTCTTTCATCTTTGCTCTGAAGAGCATATAAAAATTGACTGCTTTGCTGTAAGCTGGGAAACCTGCTCATACCTTGAAGCTTAGTAGCCTTATGAAAGCTGCTGGGAATGTGCAGCAACTTTAAGTACTCCCAACAGCTTTAAACTGGTGGAATAAAATGCCCAAAATTCAGTGTCCATGTAGTAATCTGTGTTGGTGTGCTAAAAGCTGTTGAGCTTGGGCTTTTTGGTAGGATGACACATGCCTCCTTGACTCAGTTAAGGGCTATCTGAAGAGCTGAAATGTCTGTGTGCTTGGGCATGTAGGAGACCTTTCTCCAACTTTATTTACTACATGGCTTTTGTTTTTTTAACTTTCTTCTCCAG
Seq C2 exon
TGTTCAAAACTGCTGTGGTCCTTGTGTACAAGGATGGTTCCAAACAGAAGAAGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(23.5=83.8)
A:
NA
C2:
PF0016924=PH=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]