RnoINT0150917 @ rn6
Intron Retention
Gene
ENSRNOG00000021569 | Tiam1
Description
T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol;Acc:1307455]
Coordinates
chr11:29942773-29944364:-
Coord C1 exon
chr11:29944256-29944364
Coord A exon
chr11:29942832-29944255
Coord C2 exon
chr11:29942773-29942831
Length
1424 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGT
5' ss Score
9.22
3' ss Seq
CTCCTGTCTCTCACTTGCAGTCT
3' ss Score
11.12
Exon sequences
Seq C1 exon
GTCGCGGATCTGAGCATGGGTGACCTGCTGTTGCACACCAGTGTCATCTGGCTGAACCCACCCGCCTCGCTGGGAAAGTGGAAAAAGGAGCCGGAACTGGCAGCCTTCG
Seq A exon
GTATGTGTCAGAAGACAGTGCCCGGGATGGGAAACAGCTCGCTTGGTTTTCCAAACAAGAATACTCCCTTTCCAAGAGATGTTTTATTGTGACGAAGCTAATTATAGCCTGCTGCTCCAGCCACCGATTTCTTCCAAGTAACTACAAATGAGTATAAATGAAACCACCTCGCTAACCGGCTCAGCGTGGTAGCCACTCAGCTGCATGTGTGCACACACAGGCGGGGAAGCGATTTTTTTTCACATCTTATTTTAACCGACATTTTTAACTGCTCGCCCGTCCATGTGCCCTTACAACATAATGACCTGATAGTAAATGAAGAAAAGCCAGATGGAAATCAAGAGTAAACTTGTTTCTGAGAGCTCAGACCCTGCCTCTTCACTTCTCCCCTGGCGCTGCACTGCTCTGTGTAATGCCAAGACTCAGGAGGCCGCTTCTCGGCTGGACCATTATCCTGACTGGTGTCTCCCTGGGTTATAAGGGAGATCTCAACCCTGTTATTCATTCTAGTGGAGGTGGACACGTTGGTCATTTATTTTGATAAGCTGTTTCAGGGAGGCGCAGGCGGAGGTCACAAGGGGAATCATGCTCAAGTTTTTTGAGGGAGAAAACTAAGCCAGGATACTGGGAAACATTCTTAGCTCGGGAAGTGCATGCAGCTCATGGCCTGCAGTGTGGGTGTGAATGTGCCCTCTCGCAGGACTGCTCCTGAAGTGGTTGGTTAGCAGCCCCTGCTGCTGTCTTAGGGTGTGTTTTGTCCCTAGCCTTCCCTAGAAGGCTCAGGCTAGGAAACCTAGCCAGTGCTGCCCTCCCACCTGACCTGACATTTTTGGCTTGGGAGGGGCCATGCTTACTGCTTTTTTTTTTTTCTTCACTGAATGTTCTTCCTTTCCATGATGTAATTCCCATCATATTCCAACCAGTGTTACATACAGATGTTTATGGGCCCCTCCCACTTAGAGCCACCTAACTCTCACTAAGGAATTAGGCCAAAAAGGTGAATTTTATATCCTGAATTGTGAATACAGTGTGTATTTAGTCTATAGTTTAGATATAGAGACAGTGAGGCAGGGGGATTAATGAATGGAAATCACTTCAGCGATTATTAGTCATTTGTACTAAGTAGTCCTACAGTTAGCACCGCTAAGTTTAAACCTTAAAACTGTAAAGCTAAAATACCTTAATCTTTTCCCCCTTTGGCTGTTTCTATTTATTTAGGCTTTTTCTACTTAGTTTAAAGGTGGAAACCTTTTCCCAGCGGGCTTTGACTTTCAGATGTGGTAACTAAGGTCAAGATGGCTGGGCGTCCACGGCCTGGGGTTTGCCTGCTCTCTTAACTGTAGCAGCTCTGAGAGTTACCGCAGTCAAGTGGGGCAGCCTGTGCACTTCGTGCCTTAACAGCCCCTCCTGTCTCTCACTTGCAG
Seq C2 exon
TCTTCAAAACTGCCGTGGTCCTTGTGTATAAAGATGGTTCCAAGCAGAAGAAGAAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021569:ENSRNOT00000046486:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(24.1=86.5)
A:
NA
C2:
PF0016924=PH=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]