HsaINT0167073 @ hg38
Intron Retention
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr21:31130890-31136041:-
Coord C1 exon
chr21:31135933-31136041
Coord A exon
chr21:31130949-31135932
Coord C2 exon
chr21:31130890-31130948
Length
4984 bp
Sequences
Splice sites
5' ss Seq
TCGGTGTGT
5' ss Score
5.93
3' ss Seq
CTTTATTTTATTTTTTCCAGTCT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTTGCAGATCTGAGCATGGGAGACCTGCTTTTGCACACTACCGTGATCTGGCTGAACCCGCCGGCCTCGCTGGGCAAGTGGAAAAAGGAACCAGAGTTGGCAGCATTCG
Seq A exon
GTGTGTATCAGAAAAGCGTTTTATGGAGGGGGAAAAGTCTAGCTTAGTTTTCAAAACAAGAACATTTCTTTTTCAAGACCCAATTGATTAAAAATAAAGTTAATTGCAGTTACTTGAATCGGTCTTCCTGCCGTAGCCACCAACATCTCACAAACACTAAATGAAACCTTCGAGTTAAATTGCCCTATGTGGTCACTCAGCCACATGGGTGGGCGGAAATGGCTGTGCCCAAGTCTATCCCAGACATAAACACAGAGGCAGGAAAAGAATTTTTTTTTTTTTGGCTGCTGCTCTGCGTGTCTTTTCAAAATAATGGGTTAATTATAAACCAAGGAAAAATAAAGTGAAAAATCAAGACAAAATGGCCTCTGTTTCTGAGACCCCCCAGTCCTAGATCTTTTATTTGCTTCCTGACTTTGTTGCTGTTTGGTCTTAAGGCCAGGATTTAGGATGCTGGTTCTCAGCTGAGCTGTTGTGGCAACTCTGGAGTGCCTGGATCAGCTGTGAGGTGCATCCCAATCGCATTGCCACTCAATACTAGTGAAATTAGAGATGTTTGCGAATGACTTATTTTTTAATAAACCAGTTTAGATGGATGCAGTTGCTGCAATTAGAGATCTCATGTGATTGTATTGTAATATGCTTTTTGAGAGAGAGAAAAAACATGGGTTAGCATATAATTTAGGAAACATAGCTTGTTGTTGCAATGTAAATGCTTATTGGCATATTGCTGTGTTGTTCATGAATATAAAACTATCAACACTCCATGCTTTTGTTTTAGGTTGCGTTTTGTCCTAGCCTCTTGCTAAAAGACTCATGGGTAGGAACATAATATAATGGAAATCTGCCTTATTCTCTTGCCTTATATTATTTTTGTGGGCTTGCTGGGAACGGAGGTTGCTTTCTCCTTCTTAACTAAACTTTTTTTTTTCCTCCATGATGTGAACAAAGTATCCCCAAATGGAATGTCCTAGTGATTTTAAAATCAAAGTATTTAATGCAAAGATCCATTGGACTTTGTATTTCAATGACTTAGCCTTCATTGAAAAGTTACTAATATTCCCAAAATTTCCAAAGAGCCCCTGTAGCTGTTGAGGTCATTTCATTAAAAATAACAAAGGAGGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGACGGATCACTTGAGGTCAGGAGTTCAAGACTAGCCTGGCTAATATGGTGAAACCCCGTCCTTACTAAAAATACAAAAATTAGCTGGATGTGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTAAGGCAGGAGAATCGCTTGAACCCTGGAGGCAGAGGTTGTAGTGAGCTGAGATCGTTCCACTGGACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAACAAAACAAAACAAATGTAAGTGCAGAGAAAGCATGTGACTAAATAGGCCATTCAAAGGAATATTGGGGGTATTTTAACAAGTTGTTAGTTTTTGATGGGGTAGGTGTTTTGGGGGAGGGGGGAAGTAGTATTTGCTTTCTTTTCAACATCACCACTTGTGTTTCTTCTATAGTGATTTCTTCTTGGAGGAGTCTGGGATCTCCTGGATGCTGCTTAATGGGTCATTCATGGGATGCAGGATATTGATGTAAATGACCCACACAGTGATGTGGGACTACAGACTAGCAGTCATAGAGGTCAACATTTAGATTTTTCATGGCTTTGCCCTCAGTTTTACAGATTCACTGTAGTTAGAAATCAAGAGATTTAGAATAAGAAAATAATTTAAGTAGGAGAAAATGGGTTGGCAAACTCTTTTCTGTTTCGTTTTGTTTTGTTTTTTTGGTTTTTCTGGGGGGATGGAGTCTCGCTGTGTTGCCAGGCTGGAGTGCAATGGTGCGTTCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTGTCCTGTCTCAGTCTCCCGAGTAGCTGGGACTACAGGCACGCACCACCACGCCCAGCTAATTTTTGTGTTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAAGATGGTCTCAATCTCTTGACCTTGTAATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCGCGCCCGACCCTCTTTTCTGTTAAAGGCTACATAGTACATTTTAGGCTTTGGGCCAAGAGGCCACATGCTTTGCCACTGGAGCCAGAAGCAGCCCTAGATAACATGTAAATGAATGAGATGGCTGGATCAGCAGCTGCACCACACAGGTGGCAGCAGGCCTGGGTCTGGCCTGAGGGCCCTTGTTTGCCAACCCATGGTGTAAGTGATTCAGGAAAATGCTGGTTTTGAGGTTGGGGATTTAGGTACCACTTTCTGCACAGGCTCCGATAGTGGACTCTACATTACTCTGTTCCCTGCCTCCTGGGCTGTTTATGAGAAGTCGGTGTGGGTGCTGTCTCCAGGAAGGCGGGCCCACAGCACCTGTCCCTGGTGTAAATGGAGACTGCATACTCCAGCTTCATGGGCATCACACTGTCAGCAAACTCAATAGGGGCTGTAGTTCATAAGAGAAAAACTGAAGGCTCTGAGGTACAAGACGTGTTTATCATTATTCAGAATCCTCTCCAGAGTAATAGGAAAGAGAAGGGGAAGGATTAAAATTGGGATTATGAACAAAGGCTGTAGTCATGATGAGCTTCTGTGGATTCCCAGCCGTTAAAGAGACAAGTTTGATGGTTTGGGTGTGATTTCAAGTAGCAAGGCAGAACTAGCAGAAAGGCTGAGCAAGGAGTTGAAATAAGGAAGAGGTGCTGTGAAGGAAGGATCATGGTTACCCTCAGTCGGCAGATTTGGGGTTAAAATGTGGTTGTCTTGTTTTGGTTTAAACCTCTAACCTCAGGAAATAGTGCAGCTTTCTTCTGAAACCGAAGTTGACTTGCTGCCAACGAAGCGCCTTGATGTTTCACAGGATGGCTCATGTGTACCAAATGTTGGTGATTGTTGCCTTAAACAGAAACAAACAAAAATAGAAATAGCCTTCTGCCTTGAAGGGTATTTGACATTCACGTTTTGGGGCACAGAGTGGATGCTTTAGGCTGGCAAAGGTAGCATGAGTTTTGGAGATCATCAAGGCCATGTCTGAAGGGATCGGGCAACACTGTGGAGTCACTTGAGTAACACTAGCTCCGAGGATTAGGGAAAGTTTAAGGGAGAGGCTGAGGTCCCGGTGCCAGGCTGAAGCTCACTTTCTGGCCCTCCTGCTGTGATCCACAATGGTTAAGATTGAGGGAAATCGAGGGAATCATAGCATTGAGCTGTGGTCCCAGTGGCATGGTGGCGCTTCTGAGATTAGAGTCATTGGGGTAGAGCTCTTTCATTTCTAAGAGGACCTAGCTGTCCCAGCCTCTCTGATTTCTGAAGGCTTCATAGTGGGAATAAAAGGCCTTCTCAGGTTGCTTGTGCTCAGCTGCTGTGAAGAGCTGGTGTGGCCTCCTCGGGTCAGTGTGAACCTTTGTGGGGAACCTGCCAGTCTGTGCTCTGGGAACCTTGAGGGGTCAGATGCTGTGAGGTGTGAAGGGCTATGGGCAGTCTAGACCGAGTGGCTGGAGTCAGTTTCTTTGCATCTCAGCGCTTATTTCCCTGCAGTGGAGATTAGCATGATCTTACACAAAGAGGAGACAAGACCGACCTGCCCTCCGTAGGATAGAAATTGAACCAGATACTTCCAGTTGGCCTCCAAAGGGCCTGTGAGCCTGGTGGCCCATCCCTGAGAATTCTCTGAATGTTTGTTCCTTTTGTAATTCTGTGTCTGGTGTACAAGGCTGTGCCTCCTTCAGCCGCTGTGTGACTGGGCTATTCCTTGGGGTCAGTATGAAGGGATAATGGAGACTATCTTAGTCCATTTGGGCTGCTATAACAAAATACCATAAAGTGGCCAGCTTCCAAACAACAGAGATTTATTTCTCACAGTTGTGGAGGCTGGAAGTCCAAGATCCTGCTTTCTCCTACTTCCTAGCTGTGGCTTCATATGGCGAAAGGGTCAAGGCATCTCTCTCAAGTCTCTTATAAGGACACTCATCCCATTCATGAGGACAGAGTCCTCAGGGCCTGATCACTTCTCAAAGGCCCACCTCCTGAAACCATCACAAGGGTGATTAGTTTCAAGGTATGAATTTTGGGGAAACACAAACATTTGGACCATAGCAGAGACGCTGACACAGAGAACAAAGGACAGGCAGGAGTCAGTCACCCTTCTATTCCTTCTGGGTGCCAACTCTACTTACCCTTCTAGGAAGAATCAGAATCACTGCAGGTTAAATGTGCTTGGCATTGCTTAACAAATTCTCTGGAAGATTATGCATAACTCCATTGTATCTCCCCACCCCCGAAAGAATATAAGAATGAAACTACATGTTTACCACTCCTAGAGAGCTTACCTGATTCAGTCATTCTGGAAGACATACAGTTGAATTCTATTTCATAAACTCATTTTTGTTTCTTTAGGTCAAAAGATGAGTTATATTTCCTAAATTATCACTGTCTATGTGCACTATTACCTTAATTTGCATAAATGTAAATCATCTTCAGCAATTGCATTGTTATTGTGAAAGACGTTTATATTATTCCTCCATCTACTGAATTAGTACATTTTTGTTGAATATGTATCAGCTGAAGTTTTAACCTTGAAATTGTATCATACCTAACATATTTTACGCAAAAGTTTTTTGGGCCATAGGTTAATTCCATTTATGTAGGCTTTCTATGTTTATTTTGAACCTGGAAACTTGTGTCTCAATAGGCTTTTGATTTTCACAGATGTGATGAATGAATGGAAGGTGGGTGGGAGTCAGTTAACTGGGATCTCAACGTCCTCTTCATAACTGTAGTGTTTATTACCACAAGTTGGTGATGTCAAGGGGAAAACCCTACACATGACATACCATAACTGTCTTTATTTTATTTTTTCCAG
Seq C2 exon
TCTTCAAAACTGCTGTGGTCCTTGTGTATAAAGATGGTTCCAAACAGAAGAAGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299:ENST00000286827:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(24.1=86.5)
A:
NA
C2:
PF0016924=PH=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains