GgaINT0117846 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79263741-79264017:+
Coord C1 exon
chr1:79263741-79263801
Coord A exon
chr1:79263802-79263965
Coord C2 exon
chr1:79263966-79264017
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TACTCTTTCTCCACCTGCAGCCA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGTTGCTGTGACCCCATTGCAAGGAAAGATGGACACAGTGATAAAACCTTTGCTTGTGAAG
Seq A exon
GTTAGTCAGACCACTGATGGAGAATACCTGGGGACAGTGTATTATCCCATGAAACTATTAGCAAGAGGAAGTTTAGATCTTTCCTGGAAACAGACAGGCCTACAGAGGCATGGAGACTTCCTTTCCTGCCTTCTCTTTCTGAACTACTCTTTCTCCACCTGCAG
Seq C2 exon
CCAGGAGGCATACTACAAGAGAAGACCCAAAACGCCTTTCTCTGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTGACCCCATTGCAAG
R:
GCACAGAGAAAGGCGTTTTGG
Band lengths:
106-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]