GgaINT0117857 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79271512-79272101:+
Coord C1 exon
chr1:79271512-79271579
Coord A exon
chr1:79271580-79272010
Coord C2 exon
chr1:79272011-79272101
Length
431 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TCTCTCCTGCCTTCTTTCAGTTA
3' ss Score
11.27
Exon sequences
Seq C1 exon
GATGTGGAAACAGTAACACGAGAATGTGACGGTGTCAGGAAACAGTTTGATATCCACATATCTGTTAG
Seq A exon
GTATGGGATTCTCTGATGCGTTTCCTTCACCAGAAAACATTGAAAGCTCCCACAGTCTGACCAGAACCCCCTAAATATCTCCTATTTTTGGCAAACACTGGGACAGACTGCCTTCTCCTCTGTAGATTCAAAGATCATGAAATGAGAGCTAAGGCCTGGGAAAGCAAGGGAACACATTGGCAGTGGCTTCCATAGCCCAACTATCTCAGCACAGAGCAGCACAGAGGTTCCTAGAGCACTGGCAGATGAGACAGCAGTGTTCTCAAGAACCAGAGTTGCCAGCACAGGGAGAATTTGGAGGCATGGTCTGAACTAGCATGTCTTGATTTGTACTGTAGAACAGGCCAAAACTGGGACTAGTTTATCATGATCTTCTGGAAATGCTGTGATGAGTTCCCCATCTAATGTGTTTCTCTCCTGCCTTCTTTCAG
Seq C2 exon
TTACACTGGGGACCGTGAAACCAGTAATATGGCCCTGGTGGAGGTGGATATGCTGTCAGGGTTCATTCCTACAAAAAGGTCTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]