GgaINT0117857 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:75624602-75625191:+
Coord C1 exon
chr1:75624602-75624669
Coord A exon
chr1:75624670-75625100
Coord C2 exon
chr1:75625101-75625191
Length
431 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TCTCTCCTGCCTTCTTTCAGTTA
3' ss Score
11.27
Exon sequences
Seq C1 exon
GATGTGGAAACAGTAACACGAGAATGTGACGGTGTCAGGAAACAGTTTGATATCCACATATCTGTTAG
Seq A exon
GTATGGGATTCTCTGATGCGTTTCCTTCACCAGAAAACATTGAAAGCTCCCACAGTCTGACCAGAACCCCCTAAATATCTCCTATTTTTGGCAAACACTGGGACAGACTGCCTTCTCCTCTGTAGATTCAAAGATCATGAAATGAGAGCTAAGGCCTGGGAAAGCAAGGGAACACATTGGCAGTGGCTTCCATAGCCCAACTATCTCAGCACAGAGCAGCACAGAGGTTCCTAGAGCACTGGCAGATGAGACAGCAGTGTTCTCAAGAACCAGAGTTGCCAGCACAGGGAGAATTTGGAGGCATGGTCTGAACTAGCATGTCTTGATTTGTACTGTAGAACAGGCCAAAACTGGGACTAGTTTATCATGATCTTCTGGAAATGCTGTGATGAGTTCCCCATCTAATGTGTTTCTCTCCTGCCTTCTTTCAG
Seq C2 exon
TTACACTGGGGACCGTGAAACCAGTAATATGGCCCTGGTGGAGGTGGATATGCTGTCAGGGTTCATTCCTACAAAAAGGTCTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]