GgaINT0119187 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86902836-86904912:-
Coord C1 exon
chr1:86904845-86904912
Coord A exon
chr1:86902924-86904844
Coord C2 exon
chr1:86902836-86902923
Length
1921 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ATTTTGTATGTCTGTTCCAGGAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
CTGACCAGGGTGGAGAAAAGAAACGCAAGAAAGGTGCTTCTTTTCAGACAGTGTCCTCATTACACAAG
Seq A exon
GTTTGTTGTGTAATCACTTCACCTGATAGTTGCAGTTGAGACAATGCTTTTGAAGAAGGATATTAAGGATTGTAATGGACGAAAGAGACTGAAATCCAATATCAGAATTTGATTCTGGGCTTCAGTTACTGGCTTATAATTATTAAGGGCCTGGAGCATCTCCCATATGAAGAAAAGCTGAGTAACCTGAGTCTGTACAGCCTGGGGAAAAGAAGTCAGAAGGGATCTGATAAATGTTTATAAATATCTAAAGGGAGGTGGGAGGCAAATGGATGAGGCCAGTCTCTTCTCAGTGGTGTGTAGTGAAAGGACAAGGTGCAATGGCCTAAAACTTGAACATAGGAAGTTCCATACTAATGTGCAGAAATACTTCTTTACAGTAAGGGTGATGGAGCGCTGGCACAGGCTGCCCAGAGAGGTTGTAGAGTCAATATGTAGAGTAAATATGGAGATATTCAAGACCTGTCTGGACACCTACCTGTGTGACATACTGTAGGGAACTGCTTCAGCAGGGGGGTTGGACTCGATCTCTCGAGGTCCCTTCCAACCCCTGTGATGCTGCGATTATGCTAACCTAGTACCTTGTTATTAAAACTGCACAGGTGAGAGGCTGCTCTGTTTTCTTCAAGCAATCAGGAGATAAAACATTTGTTTATTCTATTTGAGAAAGTATCACAAAACTTTGTGTCACTGTGAGTGCACAGTGTTCATCATTTATTTTGTGGCTTGTTGCTCTGTGCATGTCTTTGGTCCTGGAACTGATTACAAGTCATTTGCTTATTCCTACTTTGTTAACTGCTTCTAAAGGGATCCCACCATAAGAGTAATGGTGGAAAACAAATGTGGGTAAGTATCTCCCACTGGTCACATAATTTCATCTCATTAGGAGTTACTTACCATGACATGAAATCACAGGAAATTGAGACCTGTATCTTGCCAGGTGAAGAACTGTAAAGATAGCTGACAGATGTGTTCACAGGTGGTAATCTAGTAGTCCACTAATAGTCTAATAGTCCATAAGGAGTTGCTAAGTACCCAGTTCGCTTTGTCTCCTTTGTCATCCTGACTAGCATAGGAGAAATCTTCAGTTTTAACAGACTGCACTGATGATGATAATATATATCACCTCTAATCTTCTCTATTTTTCCTATGCTGGAAAAAGCACTTCCCCCAGAGCTCGGGGATCACTTGCCTGCCTGGGAGACAGCAGTTTAAGATTAATAAAGAAAAAATATTTGTCCAGGAAGGCAAGAGCCTAATTTTTATGAGGAACAGATGGGAAATTTGAAGTGACTAGGCAAAAATGCAGTTCAAGTCAGTCTTATTAGGTGAAAGAAATGTGATACTCATAGAAGATGGTACAAAGTCACTACATAAGCAGGATGGGATGAAAACTGTCATTGGGCACTTAAGTGTGAAGAGAGAGTACTGATGCTTAAGGCCACCATAATATTTTATGACAAAACAGAGTTTAACATCAGTGATGTGTTAATTAAGTTAGTCATAAAGGCAGTACAGCTTATTGAGGATCCTCTTTTTTTCATGTACCAATACCTGAGGAATATGTCCTGTAGTTAGTGCAAAACACTAGTTTACAGGAATGTTCTGTGGGATGATATTGCATCTTGCTGGCTGTACACATGGTTTGTGACAATTTTGGGGCTGTAAGTAAAGCACATCTTCTTAAGATACATCTTCTTAAGATTCTCCTAAAACAAATGTTGATTCCTACAATAAAGTTAATTTATGTTTTGATTTATTTGAAATCATTTATTTTTTATGACTTTTTAAGCTTATAATCTTGTTGAGGACTACTTAGAGAAATGACTTTAATAAGCTTAGCCAAGAAACAAAAGAAATAAGTGATGAGAATTCAACAAAACCATTAAAGCTCACTGTGTATTTTGTATGTCTGTTCCAG
Seq C2 exon
GAAAATTTAAATAAACTAATGACTAACCTAAGATCTACAGCCCCTCACTTTGTACGATGCATTATTCCCAACGAATCAAAAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]