HsaINT0107634 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108459362-108460367:-
Coord C1 exon
chr3:108460300-108460367
Coord A exon
chr3:108459450-108460299
Coord C2 exon
chr3:108459362-108459449
Length
850 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATT
5' ss Score
3.64
3' ss Seq
TATTATGGTCTCCATTTTAGGAA
3' ss Score
10.95
Exon sequences
Seq C1 exon
CTATACCATTTGGGGAGAAGAAACGAAAGAAAGGAGCTTCATTCCAAACGGTTGCATCTCTGCATAAA
Seq A exon
GTAATTTTTAATTGCGTCTATTCATATATTAATTGCCTCACAATCTGCATATGTTATTATTTAGTTGACATTTCACATCTTCAAATAAGGATAAAGTATCAGGAGCTAGCAAGTTGGAAAAGTTGAAGTTTATGCTGTTATTATCAAGGGCTTTAGAGGACACTGTTTGTTCCCACTTACATCCCCTTTATCATGCCTGCACCCATCTTCCAGCTGATGTGCATATTGGCTCATAACAACTCTGAGTTGTCAGAATTGCACTTAGCCAAAGGGGAAACTAAGCTGCCTCTTTGCCCTCCTCTCCAGACTTTAGCCTCTCCCTTGCCTCAAGGGAGACCACCTATGCTGCAATTGGTGCATTCGTGTTTACAGCTCTTGCTTGCAAGGATCAGACTAAAGCTGAGTCTGAATCATTGCTTTTCTCTTCCCCTGCTGTTCCCAGCTTTCTTCACTCCCTAAAAATCTCTTGAACCAGAATTCCCATCTCAGGTTTGGCTTCTAGAGAATCTGACCTAAGATAAAGGTTTTCCACAGAGAGAGAACTTGAGAAACAATTTCTTTTTTCAAGCCATTTTATAGCCCAGCCATAACTTTGATATTGCTATCAAATTCAAAATAGGTAGAGATGATTCACAATTTAACTATGTCTGTCAAATAAATATTGACTTGCCATAGGAAAGAAATAATGTGCATTTGGTAGGCAGTAAAGAATGTTGAATTCATTATTTTACTGTTAGAATACATCTTGGCTGTGAGATTAAGTTGATAGATTTGGAGACATTTGTGAGGTGGATTGGTGTTTTTAGTGATTTGCAAAGTGATTTTGTGTTTATTATGGTCTCCATTTTAG
Seq C2 exon
GAAAACCTGAATAAATTGATGACTAATCTGAAATCAACAGCACCTCATTTTGTGAGATGCATAAATCCCAATGTGAACAAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development