HsaINT0107634 @ hg19
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108178209-108179214:-
Coord C1 exon
chr3:108179147-108179214
Coord A exon
chr3:108178297-108179146
Coord C2 exon
chr3:108178209-108178296
Length
850 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATT
5' ss Score
3.64
3' ss Seq
TATTATGGTCTCCATTTTAGGAA
3' ss Score
10.95
Exon sequences
Seq C1 exon
CTATACCATTTGGGGAGAAGAAACGAAAGAAAGGAGCTTCATTCCAAACGGTTGCATCTCTGCATAAA
Seq A exon
GTAATTTTTAATTGCGTCTATTCATATATTAATTGCCTCACAATCTGCATATGTTATTATTTAGTTGACATTTCACATCTTCAAATAAGGATAAAGTATCAGGAGCTAGCAAGTTGGAAAAGTTGAAGTTTATGCTGTTATTATCAAGGGCTTTAGAGGACACTGTTTGTTCCCACTTACATCCCCTTTATCATGCCTGCACCCATCTTCCAGCTGATGTGCATATTGGCTCATAACAACTCTGAGTTGTCAGAATTGCACTTAGCCAAAGGGGAAACTAAGCTGCCTCTTTGCCCTCCTCTCCAGACTTTAGCCTCTCCCTTGCCTCAAGGGAGACCACCTATGCTGCAATTGGTGCATTCGTGTTTACAGCTCTTGCTTGCAAGGATCAGACTAAAGCTGAGTCTGAATCATTGCTTTTCTCTTCCCCTGCTGTTCCCAGCTTTCTTCACTCCCTAAAAATCTCTTGAACCAGAATTCCCATCTCAGGTTTGGCTTCTAGAGAATCTGACCTAAGATAAAGGTTTTCCACAGAGAGAGAACTTGAGAAACAATTTCTTTTTTCAAGCCATTTTATAGCCCAGCCATAACTTTGATATTGCTATCAAATTCAAAATAGGTAGAGATGATTCACAATTTAACTATGTCTGTCAAATAAATATTGACTTGCCATAGGAAAGAAATAATGTGCATTTGGTAGGCAGTAAAGAATGTTGAATTCATTATTTTACTGTTAGAATACATCTTGGCTGTGAGATTAAGTTGATAGATTTGGAGACATTTGTGAGGTGGATTGGTGTTTTTAGTGATTTGCAAAGTGATTTTGTGTTTATTATGGTCTCCATTTTAG
Seq C2 exon
GAAAACCTGAATAAATTGATGACTAATCTGAAATCAACAGCACCTCATTTTGTGAGATGCATAAATCCCAATGTGAACAAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821-MYH15:NM_014981:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)