GgaINT0119201 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86891353-86892569:-
Coord C1 exon
chr1:86892220-86892569
Coord A exon
chr1:86891478-86892219
Coord C2 exon
chr1:86891353-86891477
Length
742 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TTATTATTTGTTTGTTTCAGAGG
3' ss Score
10.01
Exon sequences
Seq C1 exon
AAAAAAGCTTGCTGCCCGCCTGCAAGAAGCTGAGGAAGCAATTGAAGCTGCCAACGCCAAGTGCTCTTCTCTGGAAAAGACAAAGCACAGGCTGCAGAACGAGCTGGAAGATATGATGATTGATCTGGAAAAGGCCAACTCAGCGGCTGCCTCCCTGGACAAGAAGCAGCGTGGCTTTGACAAGATCATCAATGACTGGAAGCAGAAGTATGAAGAGTCACAGGCTGAGCTGGAAGCTTCCCAGAAGGAGGCCCGCAGCCTCAGCACCGAGCTCTTCAAGCTGAAGAATGCCTATGAAGAGACACTGGACCATCTGGAGACTCTGAAACGGGAAAACAAGAACCTCCAAG
Seq A exon
GTAGGCTTCGTTCAGGACTCCGTGGCTGGTGCCAGAGACACAGCACTGGGAACAGCTGTGGGGAAAGGCTTTTCTCTCATCCTTAGAAGAGCTTTCAGGTGTGCCTGGAGACGCTGATGCTGGAAATGAAAGTTTTAAGCATTGAAAATGGTTTTGCCAGAGTACTGACTAGATCTGTGTAATCTATGTTGCCTACAGTTTTGTTTGAAGCAAGAATTCTTGTTGTAAGGGAGAAGGAAGACCCTTAAGTGTCAATGTAGCCTTTTACTAGCAGTGCAATCCTTGCTTGTTACACCAGTGGAGCAATTCACATCATTGAAAGCAAATTTCTAATCATAACCACTGCCTTTTCCTCCTCTCTGCCAGGGGCAGGGGAAGCGAGCTCACCCCTTGCAGGGGTGTCAGCCTCAGAGAAGGAACAAGAAAGGGGGCAAAAATGCAACAGATGAGGCCTACATCACTCACAGAGTAGGGCACGGTGTTGCTAGCCTGCAGATCACAGATAAAAACTAAACTGCTTCAAAAAGTATTTATGAGAAAGTCTGTGCCCTCAAGTTCATCAGGTAAAAACAGTTCCTGTACAAGTAAGATGTACACAAACTGTCTTGCATACAAATGAGCACTTGAGGCGGCAGTCTGAGGCATGGATCCTGTATTCTCATTCTGTGAATTGCTTTATGTTTGGAATACTCAAATTGACACTAAATCCCTCTGACCTTTTTTTATTATTTGTTTGTTTCAG
Seq C2 exon
AGGAAATTTCTGATCTGACCAATCAGATCAGTGAAGGAAACAAGAACCTCCATGAGATAGAAAAAGTCAAGAAGCAGGTAGAACAAGAAAAGTCAGAGGTTCAGCTAGCTCTGGAAGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(14.1=100),PF0003816=Filament=PD(24.6=50.0),PF0003816=Filament=FE(39.0=100),PF078897=DUF1664=PD(79.5=52.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAAAGGCCAACTCAGC
R:
TCCAGAGCTAGCTGAACCTCT
Band lengths:
342-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]