HsaINT0107650 @ hg38
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108408280-108410932:-
Coord C1 exon
chr3:108410583-108410932
Coord A exon
chr3:108408405-108410582
Coord C2 exon
chr3:108408280-108408404
Length
2178 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TTTCTTACCTCTGTCTCCAGAAG
3' ss Score
9.17
Exon sequences
Seq C1 exon
GAAGGAACTGGCAATTAGATTGCAGGAGGCAGCCGAAGCCATGGGGGTGGCCAATGCCAGAAATGCCTCCTTGGAGAGAGCCAGGCACCAGCTGCAGCTGGAGCTCGGGGACGCCCTGTCTGACCTCGGGAAGGTCCGCTCTGCAGCAGCCAGGCTGGACCAGAAGCAGCTGCAGTCTGGCAAGGCCCTTGCCGACTGGAAGCAGAAGCACGAGGAGTCCCAGGCGTTGCTGGATGCCTCTCAGAAGGAAGTTCAGGCTCTCAGTACAGAGCTCCTCAAGCTCAAGAACACCTATGAGGAGAGCATCGTGGGCCAGGAGACACTCAGGAGGGAGAACAAGAACCTCCAAG
Seq A exon
GTACACCGAGCTGGGCTCAGAGCCAAAGCCAGAGCGGGTAGCTCAGGAAGAGCCCTGGCTACAGGCAAGGCTGTCTTCAGCATTTTCACATTCCCAACATGTTTTAACTTTTCAATTTTTATACTTCTGTTTGACTTATTTTTTTTTTACTTTAGATGCTGTTTGTATTAAATTAATTCTAAAAGTAAGACTAGTTTCCTACCTTTAACTTCAGTTCCCCTCTGTAAAGGAAGCCAGTGCTGAAAATTTCTTGATATCCACAACCGTACCAAGATTTTCCATGTGTGCTATACTCAAGTGTGTAGTTTTTACCCAAATTGCATATTGTTCTACACCTTTTTTTCATATATGAATATATTTCCCGATTTAATGAATATTTCTATAGCCCATACTACGTACCAGGCACTGTTTAACTATTTATTGTTAAATTTTCAGAATAGTCTAGTGTTAGTTTTCTCATCTGTAAAATGAAGGTTATATAGGTCATAAGTTGAGTAACTTGTTCAAATTCACATTTGATAAGTCGCAGATCTGGGATTTGAGCCCAGCCAGCACGGCTCCAGCATATACGCACTTAACTACTGAGCTGTGCAACCTTCCCACGTACCTTGTGGGTCTTTGCATGCCTGTACATGGAGACCTACCATAAGCTTTTTAATAGCTACATAGTGTTTTGTAATAAAGATGGCTATCATTTAACTAGACTTTATTCATTTTAGATCCAATTATTCACAAATATGAATAATCCTACATTATATATCCCTATACATGTATTTATGCACATGTAAAAATATTTCAGTAGAATGGATCCCTGGAAAAGAAATTGCTGGGGTAATGAAATGAATTTTTAAATTTTGATTTACTGCCAAACAGCCCTTCAAAGAGGCTGCCAACTTATCCCAGCACCAACAGCAATGTGCATGAAAACCCTGAGATGCCCTGGAAGCAAGTTCATTACTGTTGGAGGCGTAAATGAAGCTTACTTTCTGTTGACCTACATAGTCTATGATCAAGGCACTAGATGGAGACGTGACGGGTGCTAAAACAGTGGTTAGAAAACTTTAGCTACGTCCAAACCAGCTGGAGGGCTTGTTAAAGCACAGATGGCTGGGGCCCACCCCCAGAGTTTCTGACTCAGTAGGTCTGAAGGATTTGTATTTCTGACAGTTTTCCAGGTGAGGCCGGTGCTGCTGATCTGGGCACCACCTTTGGACTGGGGCGGGGTTTGAATATTGAGTGAGCTTTTTCCAAAGCTCTCCAGGTGATTCTAAGGTGCGGTCAGAGTTGAGAACCTCTTCCCTGATTTTCTTCTTGATAACCCATCTTTAGGAGAGCACTTCTCAGAGAAGAATTTATTATGCAATGAAAATTTCCATCTAACATATTTGTCTTTGTAACTTCTAAAAATTCTCATCATATCACATCACAGCCCAGGATCTCAGAACCAGAGGAGCAGGTGACCTATTGAGCTCCTTCCACCACCTCTGAACTGGGTAATTCTCTGAGCTACTTGGCCCTATACCACACCTCTTAGGTACTAAAGGCAGAACTGACCATAACAATATCAGGTGGAAGAGGTTTTGTGACTTCTGGATGCCCTATTCTGTTTGTCAAAGGCTTATGTTCATGAGAGGCTAGGAAAAAACACTCAAGTGCTTGAGCTAAAGCCACTGTCTTCCTTGGGCCCCTTCTGATTCTCTGGCCTATCTGGGGCCATGCCTTGAATGCTGGCAGATATTGATCCAGCTTTTACTTTAAGTTCCTGTCGCAGTGTTGAGTGGTGGCTGAAACAATGGCAGCCACTAATGTTGATAGCTAAGCACTTACACTGGAAGGGTAGGGACTCCAGGTCTGTGTTCCTCCAGGTGGAACCTGGAATGGCTCTAATGAGCAGGACTGTCATGTAAAAGTTGCAAAAGTTGTCCAGTGTACAATACTCTGAAGCACCACCCTCACCATTTGTTGTAGACAATTTTCAATTTTCAGATGGCAAAAGACTATATGAAAAAATGAATACCCTTTTAAAATTTCTCGGTCCCATATAGGATAGGTCATCAAGTTACCAAGGGTGGCATGAGGTCACTGTTCCAGTGGGCTGGAAGAATCTGTTGTGCCTGGTATCATTGGTTTGAGACTGAGCCCATTCACTAACTTTGTTTTTCTTACCTCTGTCTCCAG
Seq C2 exon
AAGAGATTTCTAATCTGACAAACCAGGTTAGAGAAGGGACCAAGAACTTAACTGAAATGGAAAAGGTCAAGAAACTAATTGAAGAAGAGAAGACAGAAGTCCAGGTGACACTGGAAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821:ENST00000273353:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.542
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development